View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_high_20 (Length: 226)
Name: NF21078_high_20
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23496781 - 23496564
Alignment:
| Q |
1 |
catcaagactcccctcccactgaatctacttatagcttggacgccgaccttaccccttttgagctacagttgaagtatgacttagagcaatttgtgcgtt |
100 |
Q |
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| T |
23496781 |
catcaagactcccctcccactgaatctacttatagcttggacgccgaccttaccccttctgagctacagttgaggtatgacttagagcaatttgtgcgtt |
23496682 |
T |
|
| Q |
101 |
cgtttgagctgcagcaggacaaggatctggatgatccatccaagctaattaagaaagtccaatttgtggagactaggatggtgattagagggaaggatgc |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23496681 |
cgtttgagctgcag---gacaaggatctggatgatccatccaagctaattaagaaagtccaatttgtggagactaggatggtgattagagggaaggatgc |
23496585 |
T |
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| Q |
201 |
cgcccatcaaaggaggatttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
23496584 |
cgcccatcaaaggaggatttt |
23496564 |
T |
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