View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21078_low_1 (Length: 680)

Name: NF21078_low_1
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21078_low_1
NF21078_low_1
[»] chr3 (15 HSPs)
chr3 (11-541)||(11488960-11489492)
chr3 (26-541)||(5967781-5968297)
chr3 (15-541)||(10079649-10080177)
chr3 (15-541)||(10186619-10187147)
chr3 (15-539)||(2921492-2922021)
chr3 (15-541)||(11495206-11495734)
chr3 (11-514)||(3872122-3872618)
chr3 (565-665)||(8354137-8354237)
chr3 (560-665)||(5701021-5701126)
chr3 (340-452)||(7489106-7489221)
chr3 (249-509)||(4132253-4132515)
chr3 (576-664)||(22349252-22349340)
chr3 (82-151)||(4077499-4077568)
chr3 (604-656)||(290713-290765)
chr3 (395-435)||(4089955-4089995)
[»] chr4 (6 HSPs)
chr4 (15-541)||(5990488-5991016)
chr4 (610-664)||(38159650-38159704)
chr4 (585-644)||(4442107-4442166)
chr4 (567-616)||(38159305-38159354)
chr4 (576-650)||(10285464-10285536)
chr4 (576-618)||(10266439-10266481)
[»] scaffold0603 (1 HSPs)
scaffold0603 (7-541)||(2441-2977)
[»] chr5 (4 HSPs)
chr5 (15-539)||(16448746-16449278)
chr5 (558-665)||(14460132-14460239)
chr5 (560-634)||(23035139-23035212)
chr5 (564-634)||(29286057-29286126)
[»] chr8 (4 HSPs)
chr8 (31-541)||(18390019-18390528)
chr8 (560-665)||(26588111-26588216)
chr8 (560-664)||(1165444-1165549)
chr8 (560-592)||(27873630-27873662)
[»] chr1 (6 HSPs)
chr1 (74-468)||(17313804-17314200)
chr1 (560-665)||(18547880-18547985)
chr1 (560-664)||(2981095-2981199)
chr1 (560-656)||(12252521-12252617)
chr1 (84-133)||(13936123-13936172)
chr1 (402-434)||(13935820-13935852)
[»] chr2 (9 HSPs)
chr2 (562-665)||(1979979-1980082)
chr2 (560-665)||(4789218-4789323)
chr2 (558-665)||(16107345-16107452)
chr2 (560-665)||(10733850-10733956)
chr2 (560-664)||(16549925-16550029)
chr2 (557-634)||(106483-106559)
chr2 (280-362)||(42506632-42506714)
chr2 (576-620)||(39097135-39097179)
chr2 (560-656)||(42436452-42436548)
[»] chr6 (5 HSPs)
chr6 (560-665)||(7732649-7732754)
chr6 (577-665)||(32934080-32934167)
chr6 (595-665)||(24585710-24585780)
chr6 (589-630)||(2149737-2149778)
chr6 (563-664)||(5090451-5090552)
[»] chr7 (2 HSPs)
chr7 (561-656)||(6015789-6015884)
chr7 (564-625)||(13316540-13316601)


Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 11 - 541
Target Start/End: Original strand, 11488960 - 11489492
Alignment:
11 cacagaaagacaagtgagatgttcccaagttggctcagtattccacaaaatacctcctaccgagccaacagtcagttcccgcaaactcataggcaaatca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
11488960 cacagaaagacaagtgagatgttcccaagttggctcagtattccacaaaataccctctaccgagccaacagtcagttcccgcaaactcataggcaaatca 11489059  T
111 tctatgacaaaagattgaagattcggcagatcatcaatttcaatttcctgaaggtcagttaaagtgttcattgcttctggtagtgactgaagcttctgac 210  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11489060 tctatgacaaaagattgaagattcggcagatcatcaatttccatttcctgaaggtcagttaaagtgttcattgcttctggtagtgactgaagcttctgac 11489159  T
211 acttccacactaaaaaatgaatgaggtttggagttttcaatccgcctagggtaaatgatttcagttcattacaatcccatattttgatgcttctaagaaa 310  Q
    |||||||||||| ||||||||||||||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
11489160 acttccacactacaaaatgaatgaggtttggagtgtgcaatctgcctagggtaaatgacttcagttcattacaatcccatattttgatgctactaagaaa 11489259  T
311 tgagagactcttttgcgactcgtcctctgcaattaatatcgatttcagatttttacatccctcaataaacagactcttgaggac--ggagagcgcccaag 408  Q
    ||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
11489260 tgagagactcttttgcggcccgtcctctgcaattaatatcgacttcagatttttacatccctcaataaacagactcttgaggacagggagagcgcccaag 11489359  T
409 gtaaacgatatcattgaattacaactataagatgttttcaattcttcaagcgatgtgtaatggtgcaagtattcattaggtaggaactctagactctcac 508  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
11489360 gtaaacgatatcattgaattacaactataagatattttcaattcttcaagcgatgtgtaatgttgcaagtattcattaggtaggaactctagactctcac 11489459  T
509 agttactgattgtgagagacttcaaggtttttg 541  Q
    |||||||||||||||||||||||||||| ||||    
11489460 agttactgattgtgagagacttcaaggtgtttg 11489492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 26 - 541
Target Start/End: Complemental strand, 5968297 - 5967781
Alignment:
26 gagatgttcccaagttggctcagtattccacaaaatacctcctaccgagccaacagtcagttcccgcaaactcataggcaaatcatctatgacaaaagat 125  Q
    |||||||||||||||||||||| | ||||| | ||| ||||| || || ||||||||||||||| | ||||| |||||||||||||||||||||||||||    
5968297 gagatgttcccaagttggctcattcttccaaataatccctccaacagaaccaacagtcagttcctgtaaactgataggcaaatcatctatgacaaaagat 5968198  T
126 tgaagattcggcagatcatcaatttcaatttcctgaaggtcagttaaagtgttcattgcttctggtagtgactgaagcttctgacacttccacactaaaa 225  Q
    ||||||||||| |||| ||||||||| ||||| |||||| |||||| || | |||||||||| ||||||||   |||||| | |||||||||||||  ||    
5968197 tgaagattcggaagattatcaatttccatttcttgaaggccagttagagagctcattgcttcaggtagtgaactaagcttttcacacttccacactgcaa 5968098  T
226 aatgaatgaggtttggagttttcaatccgcctagggtaaatgatttcagttcattacaatcccatattttgatgcttctaagaaatgagagactcttttg 325  Q
     || ||  ||||||  |||   |||||| |||  || |||||| | |||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
5968097 tataaacaaggtttatagtgggcaatccacctgtggaaaatgactccagttcattacaatcc-atattttgatgcttttaagaaatgagagactcttttg 5967999  T
326 cgactcgtcctctgcaattaatatcgatttcagatttttacatccctcaataaacagactcttgaggac--ggagagcgcccaaggtaaacgatatcatt 423  Q
    |||| |||| || |||||||||||||| |||||||| ||||| || |||||||||||||||||||||||  ||||| | ||||| ||||| |||||||||    
5967998 cgacgcgtcttccgcaattaatatcgacttcagattcttacaaccttcaataaacagactcttgaggaccgggagaacacccaaagtaaatgatatcatt 5967899  T
424 gaattacaactataagatgttttcaattcttcaagcgatgtgtaatggtgcaagtattcattaggtaggaactctagactctcacagttactgattgtga 523  Q
    |||||||||||||||||| |||||||||| |||||||||||||| | |||||||||||||| ||| |||||||||||| || |||||||||||||||| |    
5967898 gaattacaactataagatattttcaattcctcaagcgatgtgtacttgtgcaagtattcatgaggaaggaactctagattcacacagttactgattgtaa 5967799  T
524 gagacttcaaggtttttg 541  Q
    ||   |||||||||||||    
5967798 gaattttcaaggtttttg 5967781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 541
Target Start/End: Complemental strand, 10080177 - 10079649
Alignment:
15 gaaagacaagtgagatgttcccaagttggctcagtattccacaaaatacctcctaccgagccaacagtcagttcccgcaaactcataggcaaatcatcta 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| || |||||||||||||||||| | |||||  |||||||||||||||    
10080177 gaaagacaagtgagatgttcccaagttggctcagttttccacataatccctccaacagagccaacagtcagttcctgtaaactgctaggcaaatcatcta 10080078  T
115 tgacaaaagattgaagattcggcagatcatcaatttcaatttcctgaaggtcagttaaagtgttcattgcttctggtagtgactgaagcttctgacactt 214  Q
    ||||||||||||||| ||| || |||| ||||||||| ||||| | |||| |||| | |  | ||||||||||||| ||||| |||||||||| ||||||    
10080077 tgacaaaagattgaacatttggtagattatcaatttccatttctttaaggccagtaagatcggtcattgcttctggcagtgaatgaagcttctcacactt 10079978  T
215 ccacactaaaaaatgaatgaggtttggagttttcaatccgcctagggtaaatgatttcagttcattacaatcccatattttgatgcttctaagaaatgag 314  Q
    ||||| |  || || ||  |||||||||||   |||||| |||  || ||||||||  ||||||||||| ||||||||||| ||||||||||||||||||    
10079977 ccacaatgcaatataaacaaggtttggagtagccaatccacctgagggaaatgattcaagttcattacagtcccatattttaatgcttctaagaaatgag 10079878  T
315 agactcttttgcgactcgtcctctgcaattaatatcgatttcagatttttacatccctcaataaacagactcttgagg--acggagagcgcccaaggtaa 412  Q
    |||||||| |  ||| |||| ||||||||| |||||||||||||||||||||| ||||||| ||||| ||||||||||  | ||||||  ||||||||||    
10079877 agactcttctctgacgcgtcttctgcaattgatatcgatttcagatttttacaaccctcaaaaaacatactcttgaggatagggagagatcccaaggtaa 10079778  T
413 acgatatcattgaattacaactataagatgttttcaattcttcaagcgatgtgtaatggtgcaagtattcattaggtaggaactctagactctcacagtt 512  Q
    | ||||||||||||||||| ||||||||| || | ||||| |||||  ||||| ||| || ||||||||||| ||| |||||||||||| ||||||||||    
10079777 atgatatcattgaattacagctataagatattgttaattcctcaagatatgtggaattgtccaagtattcatgaggaaggaactctagattctcacagtt 10079678  T
513 actgattgtgagagacttcaaggtttttg 541  Q
    ||||||| ||||| | |||||||| ||||    
10079677 actgattatgagaaatttcaaggtgtttg 10079649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 541
Target Start/End: Complemental strand, 10187147 - 10186619
Alignment:
15 gaaagacaagtgagatgttcccaagttggctcagtattccacaaaatacctcctaccgagccaacagtcagttcccgcaaactcataggcaaatcatcta 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| || |||||||||||||||||| | |||||  |||||||||||||||    
10187147 gaaagacaagtgagatgttcccaagttggctcagttttccacataatccctccaacagagccaacagtcagttcctgtaaactgctaggcaaatcatcta 10187048  T
115 tgacaaaagattgaagattcggcagatcatcaatttcaatttcctgaaggtcagttaaagtgttcattgcttctggtagtgactgaagcttctgacactt 214  Q
    ||||||||||||||| ||| || |||| ||||||||| ||||| | |||| |||| | |  | ||||||||||||| ||||| |||||||||| ||||||    
10187047 tgacaaaagattgaacatttggtagattatcaatttccatttctttaaggccagtaagatcggtcattgcttctggcagtgaatgaagcttctcacactt 10186948  T
215 ccacactaaaaaatgaatgaggtttggagttttcaatccgcctagggtaaatgatttcagttcattacaatcccatattttgatgcttctaagaaatgag 314  Q
    ||||| |  || || ||  |||||||||||   |||||| |||  || ||||||||  ||||||||||| ||||||||||| ||||||||||||||||||    
10186947 ccacaatgcaatataaacaaggtttggagtagccaatccacctgagggaaatgattcaagttcattacagtcccatattttaatgcttctaagaaatgag 10186848  T
315 agactcttttgcgactcgtcctctgcaattaatatcgatttcagatttttacatccctcaataaacagactcttgagg--acggagagcgcccaaggtaa 412  Q
    |||||||| |  ||| |||| ||||||||| |||||||||||||||||||||| ||||||| ||||| ||||||||||  | ||||||  ||||||||||    
10186847 agactcttctctgacgcgtcttctgcaattgatatcgatttcagatttttacaaccctcaaaaaacatactcttgaggatagggagagatcccaaggtaa 10186748  T
413 acgatatcattgaattacaactataagatgttttcaattcttcaagcgatgtgtaatggtgcaagtattcattaggtaggaactctagactctcacagtt 512  Q
    | ||||||||||||||||| ||||||||| || | ||||| |||||  ||||| ||| || ||||||||||| ||| |||||||||||| ||||||||||    
10186747 atgatatcattgaattacagctataagatattgttaattcctcaagatatgtggaattgtccaagtattcatgaggaaggaactctagattctcacagtt 10186648  T
513 actgattgtgagagacttcaaggtttttg 541  Q
    ||| ||| ||||| | |||||||| ||||    
10186647 actaattatgagaaatttcaaggtgtttg 10186619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 539
Target Start/End: Complemental strand, 2922021 - 2921492
Alignment:
15 gaaagacaagtgagatgttcccaagttggctcagtat---tccacaaaatacctcctaccgagccaacagtcagttcccgcaaactcataggcaaatcat 111  Q
    ||||||||||||||||||| ||||||||||| |||||   |||||| ||| ||||| || |||||||||||||||||| | ||||| |||||||||||||    
2922021 gaaagacaagtgagatgtttccaagttggcttagtatacttccacataatccctccaacagagccaacagtcagttcctgtaaactgataggcaaatcat 2921922  T
112 ctatgacaaaagattgaagattcggcagatcatcaatttcaatttcctgaaggtcagttaaagtgttcattgcttctggtagtgactgaagcttctgaca 211  Q
    ||||||||||| ||| |||||| || |||| ||||||||| ||||| |||||| |||||| |||||||||| ||   |||||||| |||||||| | |||    
2921921 ctatgacaaaatatttaagatttggtagattatcaatttccatttcttgaaggccagttagagtgttcattcctgaaggtagtgaatgaagcttattaca 2921822  T
212 cttccacactaaaaaatgaatgaggtttggagttttcaatccgcctagggtaaatgatttcagttcattacaatcccatattttgatgcttctaagaaat 311  Q
    |||||| | |  || || ||  |||||||||||   |||||| | ||| | |||||| | || ||| |||||||||||||||||||||||||||||||||    
2921821 cttccatattgcaatataaacaaggtttggagtaggcaatccacttagtgaaaatgactccaattccttacaatcccatattttgatgcttctaagaaat 2921722  T
312 gagagactcttttgcgactcgtcctctgcaattaatatcgatttcagatttttacatccctcaataaacagactcttgaggacgg--agagcgcccaagg 409  Q
    ||||||||||||| |||| |  | ||| |||||||| |  |||||||||||||||| ||||||||||||| |||||||||||| |  ||||| |||||||    
2921721 gagagactcttttccgacgctccttctccaattaatgtgtatttcagatttttacaaccctcaataaacaaactcttgaggacaggaagagcacccaagg 2921622  T
410 taaacgatatcattgaattacaactataagatgttttcaattcttcaagcgatgtgtaatggtgcaagtattcattaggtaggaactctagactctcaca 509  Q
    |||| ||||||||||||||||| ||||||||| |||||||||| || ||||||||||||| |||||||| ||||| ||| |||||||||||| |||||||    
2921621 taaatgatatcattgaattacagctataagatattttcaattcctcgagcgatgtgtaattgtgcaagtcttcatcaggaaggaactctagattctcaca 2921522  T
510 gttactgattgtgagagacttcaaggtttt 539  Q
     ||||| ||| ||||| | |||||||||||    
2921521 attacttattatgagaaatttcaaggtttt 2921492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 15 - 541
Target Start/End: Original strand, 11495206 - 11495734
Alignment:
15 gaaagacaagtgagatgttcccaagttggctcagtattccacaaaatacctcctaccgagccaacagtcagttcccgcaaactcataggcaaatcatcta 114  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||  |||||||||||| || | | ||||| ||||| ||||||||||    
11495206 gaaagacaagtgagatgttcccaagtttgctcagtattccacataatccctccaacatagccaacagtcaatttctgtaaactgataggaaaatcatcta 11495305  T
115 tgacaaaagattgaagattcggcagatcatcaatttcaatttcctgaaggtcagttaaagtgttcattgcttctggtagtgactgaagcttctgacactt 214  Q
    ||||||||||||||||||| || |||| ||||||||| |||||  ||||| |||| | || |||||||  ||| ||||| ||  ||||||||  ||||||    
11495306 tgacaaaagattgaagatttggtagattatcaatttccatttctagaaggccagtaagagcgttcattctttcaggtagcgaacgaagcttcccacactt 11495405  T
215 ccacactaaaaaatgaatgaggtttggagttttcaatccgcctagggtaaatgatttcagttcattacaatcccatattttgatgcttctaagaaatgag 314  Q
    |||||||  || || ||  ||||||||||    |||||| ||| ||| |||||| | ||  ||||||||||||||||||||||||||||||||||| |||    
11495406 ccacactgcaatataaacaaggtttggagcgagcaatccacctgggggaaatgactccaactcattacaatcccatattttgatgcttctaagaaacgag 11495505  T
315 agactcttttgcgactcgtcctctgcaattaatatcgatttcagatttttacatccctcaataaacagactcttgaggac--ggagagcgcccaaggtaa 412  Q
    ||||||||||  ||  |    ||||||| || ||| |||||||||||||||||||||||||| |||| ||||||||||||  ||||||| ||||||||||    
11495506 agactcttttcggatgctctttctgcaagtactattgatttcagatttttacatccctcaatgaacaaactcttgaggacagggagagcacccaaggtaa 11495605  T
413 acgatatcattgaattacaactataagatgttttcaattcttcaagcgatgtgtaatggtgcaagtattcattaggtaggaactctagactctcacagtt 512  Q
    | || |||||||||||||| ||||||||| |||||||||| || ||  ||||||||  ||| |||||||||  ||| ||||| || | | ||||||| ||    
11495606 atgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcacgaggaaggaattccaaattctcacaatt 11495705  T
513 actgattgtgagagacttcaaggtttttg 541  Q
    ||| ||| ||||| | |||||||||||||    
11495706 actaattttgagaaatttcaaggtttttg 11495734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 11 - 514
Target Start/End: Complemental strand, 3872618 - 3872122
Alignment:
11 cacagaaagacaagtgagatgttcccaagttggctcagtattccacaaaatacctcctaccgagccaacagtcagttcccgcaaactcataggcaaatca 110  Q
    |||| ||||||||||||| ||||||||| || ||||||||||||||| ||| ||||| || |||||||||||||| ||  | |||||  |||||||||||    
3872618 cacaaaaagacaagtgagttgttcccaattttgctcagtattccacataatccctccaacagagccaacagtcagctcatgtaaactgctaggcaaatca 3872519  T
111 tctatgacaaaagattgaagattcggcagatcatcaatttcaatttcctgaaggtcag--ttaaagtgttcattgcttctggtagtgactgaagcttctg 208  Q
    |||| ||           ||||| || |||| || |||||| ||||| ||||||  ||  ||| | |||||||||||||||| ||||| | |||||| |     
3872518 tctacga-----------agatttggtagattattaatttccatttcttgaaggctagctttagactgttcattgcttctggcagtgaataaagcttttc 3872430  T
209 acacttccacactaaaaaatgaatgaggtttggagttttcaatccgcctagggtaaatgatttcagttcattacaatcccatattttgatgcttctaaga 308  Q
    ||||||||||| |  || || ||  ||||||| |||   |||||| |||   | |||||| | |||||||||| | ||||||||||| ||||||||||||    
3872429 acacttccacaatgcaatataaacaaggtttgaagtcgccaatccacctgaaggaaatgactccagttcattatagtcccatattttaatgcttctaaga 3872330  T
309 aatgagagactcttttgcgactcgtcctctgcaattaatatcgatttcagatttttacatccctcaataaacagactcttgaggac--ggagagcgccca 406  Q
     |||| ||||||||||   |  | |  ||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||| ||  ||||||| ||||    
3872329 tatgaaagactcttttctaatgcattttctgcaattgatatcgatttcaaatttctacagccctcaataaacagactcttgagaacagggagagcaccca 3872230  T
407 aggtaaacgatatcattgaattacaactataagatgttttcaattcttcaagcgatgtgtaatggtgcaagtattcattaggtaggaactctagactctc 506  Q
    || |||| ||||||||||||||| | ||||||||| |||||||||| ||||| |||||||||| || ||||||||||| ||| |||||   |||| ||||    
3872229 agttaaatgatatcattgaattatagctataagatattttcaattcctcaagtgatgtgtaattgtccaagtattcatgaggaaggaatgttagattctc 3872130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 565 - 665
Target Start/End: Original strand, 8354137 - 8354237
Alignment:
565 acggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagtcatta 664  Q
    |||||||||  ||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8354137 acggatccaaaaatttcaaaaagcgaggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagtcatta 8354236  T
665 c 665  Q
    |    
8354237 c 8354237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 560 - 665
Target Start/End: Complemental strand, 5701126 - 5701021
Alignment:
560 cagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagt 659  Q
    |||||| |||||||| ||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| |||||||||||||||||||||||| | ||    
5701126 cagggatggatccagaaatttcagaaagtagggtcaagatcgtttgtcataaatatttatacaaagatatctaaaaccataaccattaaaatgataatgt 5701027  T
660 cattac 665  Q
    ||||||    
5701026 cattac 5701021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 340 - 452
Target Start/End: Original strand, 7489106 - 7489221
Alignment:
340 caattaatatcgatttcagatttttacatccctcaataaacagactcttgagg--acggagagcg-cccaaggtaaacgatatcattgaattacaactat 436  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||||||||||  | | |||  | ||||| ||||| ||||||||||||||||||| ||    
7489106 caattaatatggatttcagatttttacaaccctcaatcaacagactcttgaggttaggaagactgccccaatgtaaatgatatcattgaattacaacaat 7489205  T
437 aagatgttttcaattc 452  Q
    ||||| || |||||||    
7489206 aagatattatcaattc 7489221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 249 - 509
Target Start/End: Complemental strand, 4132515 - 4132253
Alignment:
249 aatccgcctagggtaaatgatttcagttcattacaatcccatattttgatgcttctaagaaatgagagactcttttgcgactcgtcctctgcaattaata 348  Q
    ||||| || |||| |||||| | ||||||||  |||| |  |||||||||| |||||||||   ||||  ||| ||||||| | || |||||||||||||    
4132515 aatccaccaagggaaaatgactccagttcatcgcaatgctctattttgatggttctaagaagcaagagtttctgttgcgacacatcttctgcaattaata 4132416  T
349 tcgatttcagatttttacatccctcaataaacagactcttgaggac--ggagagcgcccaaggtaaacgatatcattgaattacaactataagatgtttt 446  Q
    |||||||||| || ||||  || | |||| | |||||  | |||||  |||||||||  | |||||||||| |||| |||||||||||||  ||| |||     
4132415 tcgatttcaggttcttactgccgtaaatacatagacttctaaggacagggagagcgcatacggtaaacgatgtcatagaattacaactatcggatatttc 4132316  T
447 caattcttcaagcgatgtgtaatggtgcaagtattcattaggtaggaactctagactctcaca 509  Q
    ||| |  ||||| ||| |||||| ||| ||| |||| | ||| |||||||||||| |||||||    
4132315 caaatgctcaagtgatttgtaattgtgaaaggattcgtaaggaaggaactctagattctcaca 4132253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 576 - 664
Target Start/End: Original strand, 22349252 - 22349340
Alignment:
576 aatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagtcatta 664  Q
    ||||| |||||| | ||||||| |||||| | ||||||||||| |||||||||||||||| ||| ||||||| ||||  ||||||||||    
22349252 aatttgagaaagagaggtcaagctcgttttttataaatatttatacaaaaatatataaaatcatgaccattataatgtcgaagtcatta 22349340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 4077499 - 4077568
Alignment:
82 tcagttcccgcaaactcataggcaaatcatctatgacaaaagattgaagattcggcagatcatcaatttc 151  Q
    |||||||||| ||||| | |||||||||||||||| ||||| |||| ||||| || || ||| |||||||    
4077499 tcagttcccgtaaactgacaggcaaatcatctatggcaaaatattgcagatttggaaggtcaccaatttc 4077568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 604 - 656
Target Start/End: Original strand, 290713 - 290765
Alignment:
604 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 656  Q
    |||||| |||||||| |||||||||||||||   ||||||| |||||||||||    
290713 tatcatgaatatttatacaaaaatatataaatttataaccaataaaatgatga 290765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 395 - 435
Target Start/End: Original strand, 4089955 - 4089995
Alignment:
395 ggagagcgcccaaggtaaacgatatcattgaattacaacta 435  Q
    |||||| || ||||||||||||| |||||||||||||||||    
4089955 ggagagagcacaaggtaaacgatgtcattgaattacaacta 4089995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 250; Significance: 1e-138; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 15 - 541
Target Start/End: Complemental strand, 5991016 - 5990488
Alignment:
15 gaaagacaagtgagatgttcccaagttggctcagtattccacaaaatacctcctaccgagccaacagtcagttcccgcaaactcataggcaaatcatcta 114  Q
    ||||||||||||||||| ||||||||||  || |||||||||| ||| ||||| || ||||| ||||| ||||| || |||||  | || ||||||||||    
5991016 gaaagacaagtgagatgctcccaagttgtgtcggtattccacataatccctccaacagagccgacagtaagttcacgtaaactgcttggtaaatcatcta 5990917  T
115 tgacaaaagattgaagattcggcagatcatcaatttcaatttcctgaaggtcagttaaagtgttcattgcttctggtagtgactgaagcttctgacactt 214  Q
    || |||||||||||||||| || |||| ||||||||||| ||| |||||| || ||| | |||||||||||||||||||||| |||||||||| ||||||    
5990916 tggcaaaagattgaagatttggtagattatcaatttcaagttcttgaaggccatttagactgttcattgcttctggtagtgaatgaagcttctcacactt 5990817  T
215 ccacactaaaaaatgaatgaggtttggagttttcaatccgcctagggtaaatgatttcagttcattacaatcccatattttgatgcttctaagaaatgag 314  Q
    ||| |||  || || || ||||||||||||    ||||  ||| ||| |||||| | |||||||||||| ||||||||||||||||||||||||||||||    
5990816 ccagactgcaatataaacgaggtttggagtggctaatctacctgggggaaatgactccagttcattacagtcccatattttgatgcttctaagaaatgag 5990717  T
315 agactcttttgcgactcgtcctctgcaattaatatcgatttcagatttttacatccctcaataaacagactcttgaggac--ggagagcgcccaaggtaa 412  Q
    |||||||||| ||||  ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||  ||||||| |||||||| |    
5990716 agactcttttccgacatgtcttctgcaattaatatcgatttcagatttttacaaccctcgataaacagactcttgaggacagggagagcacccaaggtga 5990617  T
413 acgatatcattgaattacaactataagatgttttcaattcttcaagcgatgtgtaatggtgcaagtattcattaggtaggaactctagactctcacagtt 512  Q
    | ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||  || || |||||||| ||| |||||||||||| ||||||||||    
5990616 atgatatcattgaattacaactataagatattttcaattcctcaagtgatgtgtaactgtccaggtattcatgaggaaggaactctagattctcacagtt 5990517  T
513 actgattgtgagagacttcaaggtttttg 541  Q
    ||||||| ||||| | |||||||||||||    
5990516 actgattttgagaaatttcaaggtttttg 5990488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 610 - 664
Target Start/End: Original strand, 38159650 - 38159704
Alignment:
610 aaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagtcatta 664  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||    
38159650 aaatatttatacaaaaatatataaaacgataaacattaaaatgatgaagtcatta 38159704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 585 - 644
Target Start/End: Original strand, 4442107 - 4442166
Alignment:
585 aagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataacca 644  Q
    |||||||||||| ||  ||||||||||||||||||||||||| ||||||| | |||||||    
4442107 aagtggggtcaatattttttatcataaatatttaaacaaaaaaatataaatctataacca 4442166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 616
Target Start/End: Original strand, 38159305 - 38159354
Alignment:
567 ggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatt 616  Q
    |||||||  |||||||||||||| ||||||| ||||||||||||||||||    
38159305 ggatccaaaaatttcagaaagtgaggtcaagctcgtttatcataaatatt 38159354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 650
Target Start/End: Original strand, 10285464 - 10285536
Alignment:
576 aatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaa 650  Q
    |||||||  ||||||| |||||||||||||||||||||||||  | |||||||| ||||  |||||||| |||||    
10285464 aatttcaataagtgggatcaagatcgtttatcataaatattt--ataaaaatatttaaattcataaccaataaaa 10285536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 576 - 618
Target Start/End: Original strand, 10266439 - 10266481
Alignment:
576 aatttcagaaagtggggtcaagatcgtttatcataaatattta 618  Q
    |||||||  ||||||| ||||||||||||||||||||||||||    
10266439 aatttcaataagtgggatcaagatcgtttatcataaatattta 10266481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 230; Significance: 1e-126; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 7 - 541
Target Start/End: Original strand, 2441 - 2977
Alignment:
7 gcagcacagaaagacaagtgagatgttcccaagttggctcagtattccacaaaatacctcctaccgagccaacagtcagttcccgcaaactcataggcaa 106  Q
    ||||||| || |||||| ||||| ||||||||||||||| |||||||||||||||   ||| |  ||||||||||||| |||||| ||||| | ||||||    
2441 gcagcactgacagacaattgagacgttcccaagttggcttagtattccacaaaatcgatccaagagagccaacagtcaattcccgtaaactgaaaggcaa 2540  T
107 atcatctatgacaaaagattgaagattcggcagatcatcaatttcaatttcctgaaggtcagttaaagtgttcattgcttctggtagtgactgaagcttc 206  Q
    |||||||||  ||||  |||||||||| || |||  ||||||||| ||||| |||||  |||||| ||||||||||||| ||||||||||  | ||||||    
2541 atcatctatatcaaagtattgaagatttggtagactatcaatttccatttcatgaagaccagttagagtgttcattgctgctggtagtgaacggagcttc 2640  T
207 tgacacttccacactaaaaaatgaatgaggtttggagttttcaatccgcctagggtaaatgatttcagttcattacaatcccatattttgatgcttctaa 306  Q
    | ||||| |||||||  || || | |||||||||||||   |||||| ||| ||| |||||| | || ||||||||||| ||||||| ||||||||||||    
2641 tcacactgccacactgcaatataactgaggtttggagtggccaatccacctgggggaaatgactccaattcattacaataccatattatgatgcttctaa 2740  T
307 gaaatgagagactcttttgcgactcgtcctctgcaattaatatcgatttcagatttttacatccctcaataaacagactcttgaggac--ggagagcgcc 404  Q
    |||||||||||||||||| |||| |  | |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||  ||||||||||    
2741 gaaatgagagactcttttccgacgctccttctgcaattaatatcgatttcagatttttacaaccctcaataaacaaactattgaggacagggagagcgcc 2840  T
405 caaggtaaacgatatcattgaattacaactataagatgttttcaattcttcaagcgatgtgtaatggtgcaagtattcattaggtaggaactctagactc 504  Q
    ||||| ||| ||||||||||||||||||||||||||| |||| ||||  ||||| |||||||||| |||||||||||||| ||| |||||||||||| ||    
2841 caaggcaaatgatatcattgaattacaactataagatatttttaatttctcaagtgatgtgtaattgtgcaagtattcatgaggaaggaactctagattc 2940  T
505 tcacagttactgattgtgagagacttcaaggtttttg 541  Q
    |||||| |||||||| |||||   |||||||||||||    
2941 tcacagctactgattatgagaactttcaaggtttttg 2977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 539
Target Start/End: Complemental strand, 16449278 - 16448746
Alignment:
15 gaaagacaagtgagatgttcccaagttggctcagtattccacaaaatacctcctaccgagccaacagtcagttcccgcaaactcataggcaaatcatcta 114  Q
    ||||||||||| |||||||||||||||||||| |||||||||| |||  |||| || ||||||||||| |||||| | ||||| | ||||||||||||||    
16449278 gaaagacaagtcagatgttcccaagttggctccgtattccacataatcactccaacagagccaacagtaagttcctgtaaactgacaggcaaatcatcta 16449179  T
115 tgacaaaagattgaagattcggcagatcatcaatttcaatttcctgaaggtcagttaaagtgttcattgcttctggtagtgactgaagcttctgacactt 214  Q
    |||  |||||||||||||| || |||| ||||||||| ||||| |||||||  |||| ||||||||||| |||||| ||||| |||||||||| |||||     
16449178 tgattaaagattgaagatttggtagattatcaatttccatttcttgaaggttggttagagtgttcattggttctggcagtgaatgaagcttctcacactg 16449079  T
215 ccacactaaaaaatgaatgaggtttggagttttcaatccgcctagggtaaatgatttcagttcattacaatcccatattttgatgcttctaagaaatgag 314  Q
    |||||||  || || |||||||||||||||   |||||| |||  || |||||| ||||| || ||||| ||||||||||||||||||||||||||||||    
16449078 ccacactgcaatataaatgaggtttggagtgggcaatccacctgtgggaaatgacttcagctcgttacagtcccatattttgatgcttctaagaaatgag 16448979  T
315 agactcttttgcgactcgtcctctgcaattaatatcgatttcagatttttacatccctcaataaacagactcttgaggac--ggagagcgcccaaggtaa 412  Q
    ||||| ||||| || ||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||  ||||||||||||||||||    
16448978 agactattttgggagtcgtcttctgcaattaatatcgatttcagatttttacaaccctcaatgaacaaactcttgaggacagggagagcgcccaaggtaa 16448879  T
413 acgatatcattgaattacaactataagatgttttcaattcttcaagcgatg------tgtaatggtgcaagtattcattaggtaggaactctagactctc 506  Q
    | |||| |||||||||||| ||||||||| || | ||||| ||||| ||||      ||| || | ||||||| |||| |||  ||||||||||| ||||    
16448878 atgataccattgaattacagctataagatattgttaattcctcaagagatgtaaaattgtgattgcgcaagtagtcatgaggagggaactctagattctc 16448779  T
507 acagttactgattgtgagagacttcaaggtttt 539  Q
    ||| ||||||||| | ||| | |||||||||||    
16448778 acaattactgattatcagaaatttcaaggtttt 16448746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 558 - 665
Target Start/End: Original strand, 14460132 - 14460239
Alignment:
558 aacagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaa 657  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14460132 aacagggacggatccaggaatttcagaaagtggggtcacgctcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaa 14460231  T
658 gtcattac 665  Q
    ||||||||    
14460232 gtcattac 14460239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 634
Target Start/End: Original strand, 23035139 - 23035212
Alignment:
560 cagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaa 634  Q
    ||||||||||||||| ||||| |  | |||||||||| ||||||||||||  |||| |||| |||||||||||||    
23035139 cagggacggatccagaaattttaatatgtggggtcaatatcgtttatcat-tatatgtaaataaaaatatataaa 23035212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 564 - 634
Target Start/End: Original strand, 29286057 - 29286126
Alignment:
564 gacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaa 634  Q
    ||||||||||  |||||||  |||||||||||| || ||||||| |||||||||| || ||||||||||||    
29286057 gacggatccaaaaatttcaataagtggggtcaatattgtttatcttaaatatttatac-aaaatatataaa 29286126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 31 - 541
Target Start/End: Complemental strand, 18390528 - 18390019
Alignment:
31 gttcccaagttggctcagtattccacaaaatacctcctaccgagccaacagtcagttcccgcaaactcataggcaaatcatctatgacaaaagattgaag 130  Q
    ||||||||||||| ||||||||||||||||  ||||| || ||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||||    
18390528 gttcccaagttggatcagtattccacaaaaaccctccaacagagccaatagtcagttcccgcaaactagtaggcaaatcatttatgacaaaagattgaag 18390429  T
131 attcggcagatcatcaatttcaatttcctgaaggtcagttaaagtgttcattgcttctggtagtgactgaagcttctgacacttccacactaaaaaatga 230  Q
    ||| || |||| ||||||||| ||| | |||||| |||||| ||||| |   | ||  |||||||| |||||||||||||||||||||| |  || || |    
18390428 atttggaagattatcaatttccattacttgaaggccagttagagtgtcc---ggtttaggtagtgaatgaagcttctgacacttccacaatgcaatataa 18390332  T
231 atgaggtttggagttttcaatccgcctagggtaaatgatttcagttcattacaatcccatattttgatgcttctaagaaatgagagactcttttgcgact 330  Q
    ||||||||||||||   |||||| ||| ||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
18390331 atgaggtttggagtggccaatccacctgggggaaatgactccagttcattacaatcccatattttgatgcttctaagaaatgagagactcttctgcgacg 18390232  T
331 cgtcctctgcaattaatatcgatttcagatttttacatccctcaataaacagactcttgagg--acggagagcgcccaaggtaaacgatatcattgaatt 428  Q
    | || ||  ||  |||||| ||||||||||||||||| ||||| ||||||||||||||||||  | ||||||| ||||| ||||| ||||||||||||||    
18390231 catcttcaacagctaatattgatttcagatttttacaaccctccataaacagactcttgaggatagggagagcacccaaagtaaatgatatcattgaatt 18390132  T
429 acaactataagatgttttcaattcttcaagcgatgtgtaatggtgcaagtattcattaggtaggaactctagactctcacagttactgattgtgagagac 528  Q
    ||| ||||||||| |||||||||| |||||||||||||||| |||||| ||||||| ||   ||||||||||| |||  || || |||||| |||||       
18390131 acagctataagatattttcaattcctcaagcgatgtgtaattgtgcaaatattcatgagaatggaactctagattctggcaattgctgattatgagaact 18390032  T
529 ttcaaggtttttg 541  Q
    |||||||||||||    
18390031 ttcaaggtttttg 18390019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 560 - 665
Target Start/End: Original strand, 26588111 - 26588216
Alignment:
560 cagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagt 659  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
26588111 cagggacggatccagaaatttcagaaagcggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatgaagt 26588210  T
660 cattac 665  Q
    ||||||    
26588211 cattac 26588216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 560 - 664
Target Start/End: Complemental strand, 1165549 - 1165444
Alignment:
560 cagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccatt--aaaatgatgaa 657  Q
    ||||||| ||||||| |||||||||||||||||||||| ||   ||| ||||| ||||| |||||| ||||||||||||||||||||  |||||||||||    
1165549 cagggacagatccagaaatttcagaaagtggggtcaagctcaggtattataaa-atttatacaaaattatataaaaccataaccattaaaaaatgatgaa 1165451  T
658 gtcatta 664  Q
    |||||||    
1165450 gtcatta 1165444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 592
Target Start/End: Original strand, 27873630 - 27873662
Alignment:
560 cagggacggatccaggaatttcagaaagtgggg 592  Q
    |||||||||||||||||||||||||||||||||    
27873630 cagggacggatccaggaatttcagaaagtgggg 27873662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 74 - 468
Target Start/End: Complemental strand, 17314200 - 17313804
Alignment:
74 gccaacagtcagttcccgcaaactcataggcaaatcatctatgacaaaagattgaagattcggcagatcatcaatttcaatttcctgaaggtcagttaaa 173  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| ||||||| ||||| |    
17314200 gccaacagtcagttcccacaaactgaaaggcaaatcatctatgacaaatgattgaagatttggtagatcatcaatttccatttcttgaaggttagttaga 17314101  T
174 gtgttcattgcttctggtagtgactgaagcttctgacacttccacactaaaaaatgaatgaggtttggagttttcaatccgcctagggtaaatgatttca 273  Q
     |  |||||| |||||| |||||  | ||||||||||| ||||||||   ||||| ||||||||||||||| | |||||| ||| ||| |||||| |  |    
17314100 ctaatcattgattctggaagtgaagggagcttctgacatttccacaccgcaaaataaatgaggtttggagtgtgcaatccacctgggggaaatgaatcta 17314001  T
274 gttcattacaatcccatattttgatgcttctaagaaatgagagactcttttgcgactcgtcctctgcaattaatatcgatttcagatttttacatccctc 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||||||  ||||    
17314000 gttcattacaatcccatattttgatgcttctaagaaatgagagactattttgcgacccgtcttctgcaattaatattgatttcagatttttacaaacctc 17313901  T
374 aataaacagactcttgaggac--ggagagcgcccaaggtaaacgatatcattgaattacaactataagatgttttcaattcttcaagcgatgtgtaa 468  Q
    |||||||||||||||||||||  ||||||| ||||||||||| |||||||||||||||||  |||||||| || ||||||| || ||| ||||||||    
17313900 aataaacagactcttgaggacagggagagcacccaaggtaaatgatatcattgaattacagttataagatattctcaattcctcgagcaatgtgtaa 17313804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 560 - 665
Target Start/End: Original strand, 18547880 - 18547985
Alignment:
560 cagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagt 659  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18547880 cagggacggatccagaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagt 18547979  T
660 cattac 665  Q
    ||||||    
18547980 cattac 18547985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 560 - 664
Target Start/End: Complemental strand, 2981199 - 2981095
Alignment:
560 cagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagt 659  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||    
2981199 cagggacggatccagaaatttcagaaagtggggtcaagatcgtttgtcataaatatttatacaaaaatatataaaaccataaccattaaaatgataacgt 2981100  T
660 catta 664  Q
    |||||    
2981099 catta 2981095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 560 - 656
Target Start/End: Complemental strand, 12252617 - 12252521
Alignment:
560 cagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 656  Q
    |||| |||||||||| |||||||  |||||||||||| || |||||||||||||||||| |||||||||||||||   ||||||| ||||| |||||    
12252617 caggaacggatccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatga 12252521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 13936172 - 13936123
Alignment:
84 agttcccgcaaactcataggcaaatcatctatgacaaaagattgaagatt 133  Q
    |||||||| ||||| |||||||||||||||||| ||||| |||| |||||    
13936172 agttcccgtaaactgataggcaaatcatctatggcaaaatattgcagatt 13936123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 402 - 434
Target Start/End: Complemental strand, 13935852 - 13935820
Alignment:
402 gcccaaggtaaacgatatcattgaattacaact 434  Q
    ||||||||||||||||||||| |||||||||||    
13935852 gcccaaggtaaacgatatcatcgaattacaact 13935820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 562 - 665
Target Start/End: Complemental strand, 1980082 - 1979979
Alignment:
562 gggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagtca 661  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
1980082 gggacggatccagaaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatgaagtca 1979983  T
662 ttac 665  Q
    ||||    
1979982 ttac 1979979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 560 - 665
Target Start/End: Original strand, 4789218 - 4789323
Alignment:
560 cagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagt 659  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4789218 cagggacggatccaaaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagt 4789317  T
660 cattac 665  Q
    ||||||    
4789318 cattac 4789323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 558 - 665
Target Start/End: Original strand, 16107345 - 16107452
Alignment:
558 aacagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaa 657  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |     
16107345 aacagggacggatccaggaatttcagaaagtagggtcaagatcgtttgtcataaatatttatacaaaaatatataaaaccataaccattaaaatgataac 16107444  T
658 gtcattac 665  Q
    ||||||||    
16107445 gtcattac 16107452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 560 - 665
Target Start/End: Complemental strand, 10733956 - 10733850
Alignment:
560 cagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataa-atatttaaacaaaaatatataaaaccataaccattaaaatgatgaag 658  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
10733956 cagggacggatccagaaattttagaaagtggggtcaagatcgtttatcattatatatttaaacaaaaatatataaaaccataaccattaaaatgatgaag 10733857  T
659 tcattac 665  Q
    |||||||    
10733856 tcattac 10733850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 560 - 664
Target Start/End: Original strand, 16549925 - 16550029
Alignment:
560 cagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagt 659  Q
    ||||||||||| ||  ||||||||||||| |||||||  ||| |||||||||||||||| ||||||||||||||||||| | |||||||||||||||| |    
16549925 cagggacggattcaaaaatttcagaaagtcgggtcaaactcgcttatcataaatatttatacaaaaatatataaaaccacatccattaaaatgatgaaat 16550024  T
660 catta 664  Q
    |||||    
16550025 catta 16550029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 634
Target Start/End: Complemental strand, 106559 - 106483
Alignment:
557 aaacagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaa 634  Q
    |||||| ||||||||||| |||||||  ||||| |||||| || ||||||| |||||||||| || ||||||||||||    
106559 aaacagtgacggatccagaaatttcaataagtgtggtcaatattgtttatcttaaatatttatac-aaaatatataaa 106483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 362
Target Start/End: Complemental strand, 42506714 - 42506632
Alignment:
280 tacaatcccatattttgatgcttctaagaaatgagagactcttttgcgactcgtcctctgcaattaatatcgatttcagattt 362  Q
    ||||||||||||||||||| ||||||| |||| | ||  | ||||| ||| |||| ||| |||||||||| ||||||| ||||    
42506714 tacaatcccatattttgatacttctaaaaaataaaagtttattttgtgacacgtcttcttcaattaatattgatttcacattt 42506632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 576 - 620
Target Start/End: Complemental strand, 39097179 - 39097135
Alignment:
576 aatttcagaaagtggggtcaagatcgtttatcataaatatttaaa 620  Q
    ||||||||||| |||| ||||| ||||||||||||||||| ||||    
39097179 aatttcagaaaatgggatcaagctcgtttatcataaatatataaa 39097135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 560 - 656
Target Start/End: Complemental strand, 42436548 - 42436452
Alignment:
560 cagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 656  Q
    ||||||||||||||| |||||||  ||||| ||||||  |  ||||||||||||||||  | |||||||| ||||   ||||| | |||||||||||    
42436548 cagggacggatccagaaatttcaataagtgaggtcaaagttatttatcataaatatttctagaaaaatatgtaaatttataacaaataaaatgatga 42436452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 4e-43; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 560 - 665
Target Start/End: Original strand, 7732649 - 7732754
Alignment:
560 cagggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagt 659  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
7732649 cagggacggatccaagaattacagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatgaaat 7732748  T
660 cattac 665  Q
    ||||||    
7732749 cattac 7732754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 577 - 665
Target Start/End: Original strand, 32934080 - 32934167
Alignment:
577 atttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagtcattac 665  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
32934080 atttcagaaaatggggtcaagatcgtttatcataaatatttaaacaaaaatatat-aaaccatagccattaaaatgatgaagtcattac 32934167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 595 - 665
Target Start/End: Original strand, 24585710 - 24585780
Alignment:
595 aagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagtcattac 665  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||    
24585710 aagatcgtttgtcataaatatttatacaaaaatatataaaaccataaccattaaaatgataacgtcattac 24585780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 630
Target Start/End: Original strand, 2149737 - 2149778
Alignment:
589 ggggtcaagatcgtttatcataaatatttaaacaaaaatata 630  Q
    |||||||||||||||||||||||||||||| | |||||||||    
2149737 ggggtcaagatcgtttatcataaatatttataaaaaaatata 2149778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 664
Target Start/End: Original strand, 5090451 - 5090552
Alignment:
563 ggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatgaagtcat 662  Q
    |||||||| ||| |||||||  |||||||||||   || ||| ||||||||||||  |||||||| ||| ||  |||||| | |||||||||||||||||    
5090451 ggacggatgcagaaatttcaataagtggggtcacagtcatttgtcataaatatttttacaaaaatctatgaattcataacaaataaaatgatgaagtcat 5090550  T
663 ta 664  Q
    ||    
5090551 ta 5090552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 561 - 656
Target Start/End: Complemental strand, 6015884 - 6015789
Alignment:
561 agggacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 656  Q
    ||||| |||||||| |||||||  |||||||||||| || |||||||||||||||||| |||||||||||||||   ||||||| ||||| |||||    
6015884 agggatggatccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatga 6015789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 625
Target Start/End: Complemental strand, 13316601 - 13316540
Alignment:
564 gacggatccaggaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaa 625  Q
    ||||||||||| |||||||  |||||||||||| || ||||||| |||||||||| ||||||    
13316601 gacggatccagaaatttcaataagtggggtcaatattgtttatcttaaatatttatacaaaa 13316540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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