View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_low_10 (Length: 400)
Name: NF21078_low_10
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 22 - 393
Target Start/End: Complemental strand, 25816786 - 25816415
Alignment:
| Q |
22 |
gagaaggcagttgaaggctccaatgtaactgaggtagcatctggaagcatggaattaaagctcgccatgctgctgctctcgataaagttctggctctgct |
121 |
Q |
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| T |
25816786 |
gagaaggaagttgaaggctccaatgtaactgaggtagcatctggaagcatggaattaaagctcgccatgctgctgctctcgataaagttctggctctgct |
25816687 |
T |
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| Q |
122 |
tcgaaagggcatcatatcttgaattcaaaattggatcaaacctgaactgttgtgatctaaccacattagaattggtaacttgagaaggatatctctgaag |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25816686 |
tcgaaagggcatcatatcttgaattcaaaattggataaaacctgaactgttgtgatctaaccacattagaattggtaagttgagaaggatatctctgaag |
25816587 |
T |
|
| Q |
222 |
ttgttggttcacattctgatacccctgcattgctgtcggagattgtatcgatgacccaaaatagccttcaaggttagtaggattcactccagcaagccta |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25816586 |
ttgttggttcacattctgatacccctgcattgctgtcggagattgtatcgatgacccaaaatagccttcaaggttagtaggattcactccagcaagccta |
25816487 |
T |
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| Q |
322 |
cttgacccttccatcattagatttggcatattgtgatattcaaaaaatttcatgtccagatgagtattatct |
393 |
Q |
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| T |
25816486 |
cttgacccttccatcattagatttggcatattgtgatattcgaaaaatttcatgtccagatgagtattatct |
25816415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 393
Target Start/End: Complemental strand, 25822585 - 25822214
Alignment:
| Q |
22 |
gagaaggcagttgaaggctccaatgtaactgaggtagcatctggaagcatggaattaaagctcgccatgctgctgctctcgataaagttctggctctgct |
121 |
Q |
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| T |
25822585 |
gagaaggcagtagaaggttctaatgcaactgaggtagcagaaggaagcttggaattaaagcttgccacgctgctgcactcgaaaaagctctggctccgat |
25822486 |
T |
|
| Q |
122 |
tcgaaagggcatcatatcttgaattcaaaattggatcaaacctgaactgttgtgatctaaccacattagaattggtaacttgagaaggatatctctgaag |
221 |
Q |
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| |||| |||||||||||||||||||| || |||| | ||||| | | |||||| || |||||| | |||||||| | |||||| || | || |
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| T |
25822485 |
ttgaaaaggcatcatatcttgaattcacaaatggactacctctgaattctggtgatccaatcacatttgtattggtaaggtcagaagggtagccacacag |
25822386 |
T |
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| Q |
222 |
ttgttggttcacattctgatacccctgcattgctgtcggagattgtatcgatgacccaaaatagccttcaaggttagtaggattcactccagcaagccta |
321 |
Q |
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| T |
25822385 |
ttcttggttcacattttgatgcaccagcatgtctttcgaagattgtatcgatgacccaaaaatgtcttcatggttagtaggattcactcctgcaagtcta |
25822286 |
T |
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| Q |
322 |
cttgacccttccatcattagatttggcatattgtgatattcaaaaaatttcatgtccagatgagtattatct |
393 |
Q |
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||||| |||| || ||||| || ||||||| ||| ||| | ||||||||||| |||| |||||||||| |
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| T |
25822285 |
tttgactcttctattattagcttcggcatatgacgattttcgagaaatttcatgtttagatcagtattatct |
25822214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 25813315 - 25813235
Alignment:
| Q |
246 |
ctgcattgctgtcggagattgtatcgatgacccaaaatagccttcaaggttagtaggattcactccagcaagcctacttga |
326 |
Q |
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|||||||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||| |||| |
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| T |
25813315 |
ctgcattgtggtcggagattgtatcgatgacccgaaaaagttttcaaggttagtaggattcactcttgcaagcctatttga |
25813235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 326
Target Start/End: Complemental strand, 25819049 - 25818906
Alignment:
| Q |
183 |
cacattagaattggtaacttgagaaggatatctctgaagttgttggttcacattctgatacccctgcattgctgtcggagattgtatcgatgacccaaaa |
282 |
Q |
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|||||| ||||||| || | ||||||||||| | |||||| ||||| | ||||||| | ||||||||| |||||||| |||| | |||||| ||| |
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| T |
25819049 |
cacattggaattggaaagattagaaggatatccccaaagttgctggtttgcgttctgatgcacctgcattgaggtcggagaatgtaacactgacccgaaa |
25818950 |
T |
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| Q |
283 |
tagccttcaaggttagtaggattcactccagcaagcctacttga |
326 |
Q |
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| T |
25818949 |
aagttttcaaggttagtaggattcactcctgcaagcctatttga |
25818906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 33648530 - 33648440
Alignment:
| Q |
236 |
tctgatacccctgcattgctgtcggagattgtatcgatgacccaaaatagccttcaaggttagtaggattcactccagcaagcctacttga |
326 |
Q |
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|||||| | |||| |||| ||||||||||||||| |||||||||||| | |||||||||||||||||||||||| ||||||||| |||| |
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| T |
33648530 |
tctgatgcacctgtattgatgtcggagattgtattgatgacccaaaaatgttttcaaggttagtaggattcactcctgcaagcctatttga |
33648440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 33648670 - 33648607
Alignment:
| Q |
72 |
ggaattaaagctcgccatgctgctgctctcgataaagttctggctctgcttcgaaagggcatca |
135 |
Q |
| |
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||||||||| |||||||||||||||| ||| |||||| | ||||| ||||||||| ||||||| |
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| T |
33648670 |
ggaattaaatctcgccatgctgctgcactcaataaagctttggctacgcttcgaaaaggcatca |
33648607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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