View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_low_13 (Length: 359)
Name: NF21078_low_13
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 32214495 - 32214161
Alignment:
| Q |
19 |
gtttagccgtaatcaatttgtcactgcaaaaccatcatacaagtggattatga----ccaagtttctgacagatttttcaataatctgaaataaaaatta |
114 |
Q |
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| T |
32214495 |
gtttagccgtaatcaatttgtcactgcaaaaccatcatacaagtggattatgatacaccaagtttctgacagatttttcaataatctgaaataaaaatta |
32214396 |
T |
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| Q |
115 |
atgtatgaaccaaattaatgtatttttgtcatgttttgtatcatcaataaacttgattttgcttaccctcattttattttgttgttgttgacatcttgca |
214 |
Q |
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| T |
32214395 |
atgtatgaaccaaattaatgtatttttgtcatgttttgtatcatcaataaacttgattttgcttaccctcattttattttgttgttgttgacatcttgca |
32214296 |
T |
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| Q |
215 |
ggaataagcctaaatcgaaagaaccaaattgatatgaagaagattaaatataaatattgcagtaagatgtctaatcttttattgtttttgtagcttgtat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32214295 |
ggaataagcctaaatcgaaagaaccaaattgatatgaagaagattaaatataaatattgcagtaagatgtctaatcttttattgtttttgtagcttgtat |
32214196 |
T |
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| Q |
315 |
ccaatctgtttctttgtagtaggttgccttctctg |
349 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32214195 |
ccaatctgtttctttgtagtaggttgccttctctg |
32214161 |
T |
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