View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_low_16 (Length: 336)
Name: NF21078_low_16
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 161 - 329
Target Start/End: Original strand, 5472562 - 5472730
Alignment:
| Q |
161 |
tcaatggcatccacagacaagtcaccaaacccaacaccagcaaagggttcagatccaatacccggagaagcgatgacaatggaacagcacgtggtggaca |
260 |
Q |
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| T |
5472562 |
tcaatggcatccactgacaagtcaccaaacccaacaccagcaaagggttcagatccaactccgggcgaagcaatgacaatggaacaacacgtggtggaca |
5472661 |
T |
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| Q |
261 |
agagtgcaatgatggttcaaagtttcaagcccataaaccaaatgagtcagcatgtgtgtacctttgcta |
329 |
Q |
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| T |
5472662 |
agagtgcaatgatggttcaaagtttcaagcccataaaccaaatgagtcagcatgtgtgtacctttgcta |
5472730 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 5472422 - 5472483
Alignment:
| Q |
21 |
acgtgtaaccaaaacccaacttcactcattcttttctccatgcaacttgttctgttcctctt |
82 |
Q |
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| T |
5472422 |
acgtgtaaccaaaacccaacttcactcattcttttctccatgcaacttgttctgttcctctt |
5472483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 52074808 - 52074725
Alignment:
| Q |
161 |
tcaatggcatccacagacaagtcaccaaacccaacaccagcaaagggttcagatccaatacccggagaagcgatgacaatggaa |
244 |
Q |
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| T |
52074808 |
tcaatggcatccacagtcaagtcactaaacccaacaccaacaaagggttcagatccaacacctggagaagcaatgacaatggaa |
52074725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 52073506 - 52073457
Alignment:
| Q |
239 |
atggaacagcacgtggtggacaagagtgcaatgatggttcaaagtttcaa |
288 |
Q |
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| T |
52073506 |
atggaacagcacgtggtggacaagagtgcaatgatggttcaaagtttcaa |
52073457 |
T |
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