View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21078_low_17 (Length: 318)
Name: NF21078_low_17
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 10698065 - 10698349
Alignment:
| Q |
16 |
acaattatcatcaaacaaaaatcaagcctcttagaaaaggtcatgaaattggcaagagtggtctcaacttccttctcatttgtgggcgtagcctaataat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10698065 |
acaattatcatcaaacaaaaatcaagcctcttagaaaaggtcatgaaattggcaagagtggtctcaacttccttctcatttgtgggcgtagcctaataat |
10698164 |
T |
|
| Q |
116 |
catgacaaagatatgagaaatgaaccataatgtgtatattgtaatgtatccaaatagtccacaattttctggaaagaacatcaacaccaaagaaattatt |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10698165 |
catgacaaagatatgagaaatgaaccataatgtgtatattgtaatgtatccaaatagtccacaattttctggaaagaacatcaacaccaaagaaattatt |
10698264 |
T |
|
| Q |
216 |
gaaagggaaccaaacacttccatgagggtatcaacccttgttgtaaacttaagcttaatccaaaaggccatacaatataggagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10698265 |
gaaagggaaccaaacacttccatgagggtatcaacccttgttgtaaacttaagcttaatccaaaaggccaaacaatataggagaa |
10698349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 114 - 300
Target Start/End: Original strand, 10707372 - 10707558
Alignment:
| Q |
114 |
atcatgacaaagatatgagaaatgaaccataatgtgtatattgtaatgtatccaaatagtccacaattttctggaaagaacatcaacaccaaagaaatta |
213 |
Q |
| |
|
|||||||||| | |||| |||||||||||| ||| ||||| ||| |||||||| | | | |||||||||||||||||||||||||||||||||| || |
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| T |
10707372 |
atcatgacaagtacatgacaaatgaaccatattgtatatatgataaagtatccaagtgtttcccaattttctggaaagaacatcaacaccaaagaaacta |
10707471 |
T |
|
| Q |
214 |
ttgaaagggaaccaaacacttccatgagggtatcaacccttgttgtaaacttaagcttaatccaaaaggccatacaatataggagaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| | ||||||||| |||| |
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|
| T |
10707472 |
ttgaaagggaaccaaacacttccatgagggtatcaacccttgttgcaaacataagcttaatccaaaaggcaaaacaatatagtagaa |
10707558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 114 - 283
Target Start/End: Original strand, 10693576 - 10693745
Alignment:
| Q |
114 |
atcatgacaaagatatgagaaatgaaccataatgtgtatattgtaatgtatccaaatagtccacaattttctggaaagaacatcaacaccaaagaaatta |
213 |
Q |
| |
|
|||||||||| | |||| |||||||||||| ||||||||| ||||||||||| ||| ||| ||||| | ||| |||||||||| ||||||||||| || |
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| T |
10693576 |
atcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaacta |
10693675 |
T |
|
| Q |
214 |
ttgaaagggaaccaaacacttccatgagggtatcaacccttgttgtaaacttaagcttaatccaaaaggc |
283 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||||| |
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|
| T |
10693676 |
ttgaaagggaaccaaacacttccatgaaggtatcaaccctagttgcaaacttgagcttaatccaaaaggc |
10693745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 128 - 300
Target Start/End: Original strand, 10657467 - 10657639
Alignment:
| Q |
128 |
atgagaaatgaaccataatgtgtatattgtaatgtatccaaatagtccacaattttctggaaagaacatcaacaccaaagaaattattgaaagggaacca |
227 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||||||||||| ||| || || | ||| | |||||||||||||||||||||||||||||| |||||| |
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|
| T |
10657467 |
atgacaaatgaaccataatgtgtaaatggtaatgtatccaaataatccccatttgtttgggatgaacatcaacaccaaagaaattattgaaagtgaacca |
10657566 |
T |
|
| Q |
228 |
aacacttccatgagggtatcaacccttgttgtaaacttaagcttaatccaaaaggccatacaatataggagaa |
300 |
Q |
| |
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||| |||||||||||||||||| ||| | | |||||||||||||||||||||||| | |||||||| |||| |
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| T |
10657567 |
aacgcttccatgagggtatcaagtcttatagcaaacttaagcttaatccaaaaggcaaagcaatatagtagaa |
10657639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 128 - 300
Target Start/End: Original strand, 10690244 - 10690416
Alignment:
| Q |
128 |
atgagaaatgaaccataatgtgtatattgtaatgtatccaaatagtccacaattttctggaaagaacatcaacaccaaagaaattattgaaagggaacca |
227 |
Q |
| |
|
|||| |||||||||||| ||||||||| |||| |||||||||| ||| ||||||||||| | |||||||||||||| ||||||| |||||| |||||| |
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|
| T |
10690244 |
atgaaaaatgaaccatattgtgtatatgataatatatccaaataatccccaattttctgggagcaacatcaacaccaatgaaattaatgaaagtgaacca |
10690343 |
T |
|
| Q |
228 |
aacacttccatgagggtatcaacccttgttgtaaacttaagcttaatccaaaaggccatacaatataggagaa |
300 |
Q |
| |
|
|||||||||| | ||||||||||||||| | |||||||||||||||| ||||||| |||||||| |||| |
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| T |
10690344 |
aacacttccaacaaggtatcaacccttgtagcaaacttaagcttaatcatgaaggccaagcaatatagtagaa |
10690416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 231
Target Start/End: Original strand, 10633813 - 10633980
Alignment:
| Q |
64 |
ttggcaagagtggtctcaacttccttctcatttgtgggcgtagcctaataatcatgacaaagatatgagaaatgaaccataatgtgtatattgtaatgta |
163 |
Q |
| |
|
||||||||| ||||| |||||||||||| || ||||| ||||||| ||||||||| ||||| | |||| |||||||||| ||||||||| |||||| |
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|
| T |
10633813 |
ttggcaagattggtcgcaacttccttctaatatgtggacgtagcccaataatcattacaaatacatgactaatgaaccatgttgtgtatatgacaatgta |
10633912 |
T |
|
| Q |
164 |
tccaaatagtccacaattttctggaaagaacatcaacaccaaagaaattattgaaagggaaccaaaca |
231 |
Q |
| |
|
||||| || ||| ||| ||| ||||||||||||| |||||||||||||||||| || |||||||||| |
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|
| T |
10633913 |
tccaactactccccaacttttaggaaagaacatcatcaccaaagaaattattgagagcgaaccaaaca |
10633980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 10657391 - 10657432
Alignment:
| Q |
64 |
ttggcaagagtggtctcaacttccttctcatttgtgggcgta |
105 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||| |||| |
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|
| T |
10657391 |
ttggcaagagtggacgcaacttccttctcatttgtggacgta |
10657432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 15240587 - 15240460
Alignment:
| Q |
133 |
aaatgaaccataatgtgtatattgtaatgtatccaaatagtccacaattttctggaaagaacatcaacaccaaagaaattattgaaagggaaccaaacac |
232 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||| ||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
15240587 |
aaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaattattgaaagggaaccaaacac |
15240488 |
T |
|
| Q |
233 |
ttccatgagggtatcaacccttgttgta |
260 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
15240487 |
ttccatgagggtatcaatccttgttgta |
15240460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 157 - 300
Target Start/End: Complemental strand, 15246894 - 15246751
Alignment:
| Q |
157 |
taatgtatccaaatagtccacaattttctggaaagaacatcaacaccaaagaaattattgaaagggaaccaaacacttccatgagggtatcaacccttgt |
256 |
Q |
| |
|
||||||||||| ||| ||| ||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||| |||| | |
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|
| T |
15246894 |
taatgtatccagataatccccaattctttgggaagaacatcaacaccaaagaaattattgaaagcgaaccaaacacttccttaagggtatcaagccttct |
15246795 |
T |
|
| Q |
257 |
tgtaaacttaagcttaatccaaaaggccatacaatataggagaa |
300 |
Q |
| |
|
| ||| ||||| |||| || ||| |||| ||||||||| |||| |
|
|
| T |
15246794 |
ggcaaatttaagtttaaccctaaaagccaaacaatatagtagaa |
15246751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 300
Target Start/End: Complemental strand, 33777566 - 33777396
Alignment:
| Q |
133 |
aaatgaaccataatgtgtatattgtaatgtatccaaatagtccacaattttctggaaagaacatcaacaccaaagaaattattgaaagggaaccaaacac |
232 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | ||| ||| ||||| | ||||| |||||| ||||||||||||| ||||||||| ||||||||||| |
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|
| T |
33777566 |
aaatgaaccatgctgtgtatatgataatgtatgaacatactccccaattgtttggaaggaacattaacaccaaagaaactattgaaagtgaaccaaacac |
33777467 |
T |
|
| Q |
233 |
ttccatgagggtatcaacccttgtt---gtaaacttaagcttaatccaaaaggccatacaatataggagaa |
300 |
Q |
| |
|
||| ||||| ||||||| |||||| |||||||||| ||||||||||||| ||| ||||||||| |||| |
|
|
| T |
33777466 |
ttctatgagtgtatcaattcttgttgtggtaaacttaatcttaatccaaaagaccaaacaatatagtagaa |
33777396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 33774865 - 33774811
Alignment:
| Q |
195 |
atcaacaccaaagaaattattgaaagggaaccaaacacttccatgagggtatcaa |
249 |
Q |
| |
|
|||||||||||||||| ||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
33774865 |
atcaacaccaaagaaactattgaaagtgagccaaacacttccatgagtgtatcaa |
33774811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 33777650 - 33777609
Alignment:
| Q |
64 |
ttggcaagagtggtctcaacttccttctcatttgtgggcgta |
105 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| |||| |
|
|
| T |
33777650 |
ttggcaggagtggtcgcaacttccttctcatttgtggacgta |
33777609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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