View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_low_2 (Length: 643)
Name: NF21078_low_2
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 19 - 632
Target Start/End: Original strand, 1729272 - 1729878
Alignment:
| Q |
19 |
aattggagattaatatctaaacttagcaagttaaaatttgtttgaatttgtgcttccattcgccatagttgatatcttgaatcgaaccattgctcaatga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1729272 |
aattggagattaatatctaaacttagcaagttaaaatttgtttgaatttgtgcttccattcgccatagttgatatcttgaatcgaaccattgctca---- |
1729367 |
T |
|
| Q |
119 |
taccaatttcttaggataaatgcttcttttgtgataaatatcgagtgaattgtgacaatagagnnnnnnnttgaaagtggattatgatgagtgtaaaact |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
1729368 |
---caatttcttaggataaatgcttcttttgtgataaatatcgagtgaattgtgagaatagagaaaaaaattgaaagtggattatgatgagtgtaaaact |
1729464 |
T |
|
| Q |
219 |
actttgctgattcaatttgagcaataagagttactatcaacaacaaagtactaactttagctaaaaaatacttgcataaagcttaacaactatagctaaa |
318 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1729465 |
actttgttggttcaatttgagcaataagagttactatcaacaacaaagtactaactttagctaaaaaatacttgcataaagcttaacaactttagctaaa |
1729564 |
T |
|
| Q |
319 |
aaatcacaacaaagtaactaacttttaaagctaattttcaatacaagttactatcaacaactatgaattattgaactttattaaatccaaacacagtgca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1729565 |
aaatcacaacaaagtaactaacttttaaagctaattttcaatccaagttactatcaacaactatgaattattgaactttattaaatccaaacacagcgca |
1729664 |
T |
|
| Q |
419 |
ctaatttaaatgataaatgaagggctatgctatctgaaaattgtatgtttaagtttgatccaaaccagatttttcgtgcataatgacaatccataaggat |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1729665 |
ctaatttaaatgataaatgaagggctatgctatctgaaaattgaatgtttaagtttgatccaaaccagatttttcttgcataatgacaatccataaggat |
1729764 |
T |
|
| Q |
519 |
atggtaactaactttctcaatattgttgtagactctacgacataactaattagtagttaaacccctttggtttagttcacttctcaataaaccccctgta |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1729765 |
atggtaactaactttctcaatattgttgtagactctacgacataactaattagtagttaaacccctttggtttagttcacttctcaataaaccccctgta |
1729864 |
T |
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| Q |
619 |
agtgaatcattcat |
632 |
Q |
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|||||||||||||| |
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| T |
1729865 |
agtgaatcattcat |
1729878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 18004370 - 18004338
Alignment:
| Q |
19 |
aattggagattaatatctaaacttagcaagtta |
51 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |
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| T |
18004370 |
aattggagattaatttctaaacttagcaagtta |
18004338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 4415507 - 4415536
Alignment:
| Q |
22 |
tggagattaatatctaaacttagcaagtta |
51 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
4415507 |
tggagattaatatctaaacttagcaagtta |
4415536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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