View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_low_20 (Length: 254)
Name: NF21078_low_20
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 102 - 239
Target Start/End: Original strand, 27549390 - 27549527
Alignment:
| Q |
102 |
gttcagatttttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgcc |
201 |
Q |
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| T |
27549390 |
gttcagattgttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgcc |
27549489 |
T |
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| Q |
202 |
gccaccgatcgtgcaatgtttgtcttgtaataagtata |
239 |
Q |
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| T |
27549490 |
gccaccgatcgtgcaatgtttgtcttgtaataagtata |
27549527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 27945319 - 27945191
Alignment:
| Q |
111 |
tttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgccgccaccgat |
210 |
Q |
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| T |
27945319 |
tttagagtattactgaccagcaagaggtccatgtttaacgagattggcggcgatttggttgtcatcaaccgaaatagaactgaaatttgccgccaccgat |
27945220 |
T |
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| Q |
211 |
cgtgcaatgtttgtcttgtaataagtata |
239 |
Q |
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| T |
27945219 |
cgtgcagtgtttgtcttataataagtata |
27945191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 27436827 - 27436699
Alignment:
| Q |
111 |
tttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgccgccaccgat |
210 |
Q |
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| T |
27436827 |
tttagagtattactgaccagcaagaggtccatgtttaacgagattggcggtgatttggttgtcatcaaccgaaatagaactgaaatttgccgccaccgat |
27436728 |
T |
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| Q |
211 |
cgtgcaatgtttgtcttgtaataagtata |
239 |
Q |
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| T |
27436727 |
cgtgcagtgtttgtcttataataagtata |
27436699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27549289 - 27549338
Alignment:
| Q |
1 |
tatgtctgcatgtatgccgcatttatggcaactgcatttgtgaacatttg |
50 |
Q |
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| T |
27549289 |
tatgtctgcatgtatgccgcatttatggcaactgcatttgtgaacatttg |
27549338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27436928 - 27436879
Alignment:
| Q |
1 |
tatgtctgcatgtatgccgcatttatggcaactgcatttgtgaacatttg |
50 |
Q |
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| T |
27436928 |
tatgtctgcatgtataccgcgtttattgcagctgcatttgtgaacatttg |
27436879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27945420 - 27945371
Alignment:
| Q |
1 |
tatgtctgcatgtatgccgcatttatggcaactgcatttgtgaacatttg |
50 |
Q |
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| T |
27945420 |
tatgtctgcatgtataccgcgtttattgcagctgcatttgtgaacatttg |
27945371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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