View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_low_21 (Length: 238)
Name: NF21078_low_21
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 169
Target Start/End: Complemental strand, 42296711 - 42296584
Alignment:
| Q |
42 |
tatttcaaaaactgttttaaaatggttnnnnnnn-tatcatttctcaatgccatttaacaaatattttctccttgcnnnnnnnatcagggacaccatata |
140 |
Q |
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| T |
42296711 |
tatttcaaaaactgttttaaaatggttaaaaaaaatatcatttctcaatgccatttaacaaatattttctccttgc-ttttttatcagggacaccatata |
42296613 |
T |
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| Q |
141 |
caaaggagaaacattaataatctatctaa |
169 |
Q |
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| T |
42296612 |
caaaggagaaacatcaatgatctatctaa |
42296584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42296918 - 42296860
Alignment:
| Q |
1 |
ataagagagagcttcttctagaaaaaagtataagtgagaattatttcaaaaactgtttt |
59 |
Q |
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| T |
42296918 |
ataagagagagcttcttctagaaaaaagtataagtgagaattatttcaaaaactgtttt |
42296860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 42296565 - 42296536
Alignment:
| Q |
188 |
gcaaaaaggggtgtagttgtgaaccaactg |
217 |
Q |
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| T |
42296565 |
gcaaaaaggggtgtagttgtgaaccaactg |
42296536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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