View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_low_22 (Length: 236)
Name: NF21078_low_22
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 27360319 - 27360558
Alignment:
| Q |
1 |
tcactttgaaagtttgatcaaactatctt---attatgtttctgttcgtacttattttctgagctgaatattcaaaccaagcat--------taatccaa |
89 |
Q |
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| T |
27360319 |
tcactttgaaagtttgatcaaactatcttcttattatgtttctgttcatacttattttctgagctgaatattcaaaccaagcaagtggtatctaatccaa |
27360418 |
T |
|
| Q |
90 |
gaacaatcctgtttccaacaagcaaccctgtgtgagcacaagcagagtcaccattgtactctcattcaaggctagttcaaagcagtcacttaggacataa |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27360419 |
gaacaatcctgtttccaacaagcaaccctgtgtgagcacaagcagagtcaccattgtactcttattcaaggctagttcaaagcagtcacttaggacatac |
27360518 |
T |
|
| Q |
190 |
atagcctgcaatcatggtattccaagactccacacctttg |
229 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| |
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| T |
27360519 |
attgcctgcaatcatggtattccaagactccacacctttg |
27360558 |
T |
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