View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21078_low_4 (Length: 612)

Name: NF21078_low_4
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21078_low_4
NF21078_low_4
[»] chr3 (5 HSPs)
chr3 (15-594)||(55211289-55211861)
chr3 (15-121)||(30912028-30912135)
chr3 (23-190)||(36326473-36326640)
chr3 (15-117)||(32414709-32414816)
chr3 (42-182)||(14029319-14029469)
[»] chr7 (8 HSPs)
chr7 (15-190)||(42513062-42513239)
chr7 (15-111)||(41712267-41712364)
chr7 (15-115)||(38572287-38572388)
chr7 (23-171)||(49017108-49017258)
chr7 (42-190)||(30456308-30456456)
chr7 (95-193)||(6102956-6103056)
chr7 (69-173)||(11206499-11206604)
chr7 (42-190)||(30452703-30452847)
[»] chr6 (6 HSPs)
chr6 (15-191)||(4834692-4834870)
chr6 (15-190)||(33242822-33242998)
chr6 (15-190)||(7415612-7415789)
chr6 (15-190)||(7426559-7426736)
chr6 (23-190)||(7422628-7422797)
chr6 (89-190)||(13886589-13886691)
[»] chr5 (5 HSPs)
chr5 (15-194)||(8123501-8123682)
chr5 (15-121)||(671435-671542)
chr5 (64-191)||(41709523-41709651)
chr5 (46-190)||(24108702-24108848)
chr5 (96-190)||(10321869-10321963)
[»] chr1 (4 HSPs)
chr1 (42-190)||(23405475-23405624)
chr1 (15-190)||(18583886-18584063)
chr1 (64-125)||(13087701-13087763)
chr1 (98-183)||(9893800-9893886)
[»] chr8 (2 HSPs)
chr8 (45-190)||(44761971-44762117)
chr8 (45-190)||(44765278-44765424)
[»] chr2 (3 HSPs)
chr2 (42-173)||(45327421-45327553)
chr2 (85-190)||(31211857-31211963)
chr2 (15-83)||(31211662-31211731)
[»] chr4 (4 HSPs)
chr4 (45-190)||(36050668-36050813)
chr4 (45-190)||(36053927-36054072)
chr4 (42-190)||(27387621-27387770)
chr4 (15-68)||(20441042-20441096)


Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 15 - 594
Target Start/End: Complemental strand, 55211861 - 55211289
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatata 113  Q
    ||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||     ||||||| ||||||||||||||||||||||||||||    
T  55211861 gataatattgagtatgttagggtgcacttatcttattatgaatatgcacaagtctatat-----ttgtatgccttattatgagaatcaatgaaaaatata 55211767  T
Q  114 atgaatttatttctctcttatctctagtttttctctaatttatggaatgtgatccctacttaaattgggtagtatcaatatcagcaacacttcttgtgca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||    
T  55211766 atgaatttatttctctcttatctctagtttttctctaatttatggaatgtgcttcctacttaaattggatagtatcaatatcagcaacacttgttgtgca 55211667  T
Q  214 tcttctgctactgtttagtttggcagtgggagaacacttctcgcctaacaataaaacatattgccatgattttgttgaagcaatgaattgtagcttcggt 313  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55211666 tcttctgctactgtttggtttggcagtgggagaacacttctcgcctaacaataaaacatattgccatgattttgttgaagcaatgaattgtagcttcggt 55211567  T
Q  314 gaaatgtgtggtaaggtaatgtggcagtccaaagttgttggcatggaaataaatagaatctttggatatcgggttgttgtagcattacttgcttaaaaaa 413  Q
    ||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55211566 gaaatgtgtggtaaggtaatgtggcagtccaca---gttggcatggaaataaatagaatctttggatatcgggttgttgtagcattacttgcttaaaaaa 55211470  T
Q  414 catctcgtcagaatttcgtcattcaaatggagaagatgaaaatcgttttgtataaatttatccatctggagaaaagattatattttccaccatctgggtt 513  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55211469 catctcgtcagaatttcgtcattcaaatggagaagatgaatatcgttttgtataaatttatccatctggagaaaagattatattttccaccatctgggtt 55211370  T
Q  514 gctaaattcaaacaagtgtaatttttaaaaaatcaatggaacaaaagtatctctcatatcttgtactattgttaatatcac 594  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55211369 gctaaattcaaacaagtgtaatttttaacaaatcaatggaacaaaagtatctctcatatcttgtactattgttaatatcac 55211289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 30912028 - 30912135
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatata 113  Q
    ||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  30912028 gataatattgagtatgttagggtgcacttattttattgtgagtatgcacaagtctatataagtattgtatgccttattatgagaatcaatgaaaaatata 30912127  T
Q  114 atgaattt 121  Q
    ||||||||    
T  30912128 atgaattt 30912135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 36326473 - 36326640
Alignment:
Q  23 tgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaattt 121  Q
    |||||||||||||||||||| |  ||||||||||||||||  |||||||||||  ||||||||  |||||||||||||||||||||||||||||||||||    
T  36326473 tgagtatgttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattt 36326570  T
Q  122 atttctctcttatctctagttttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
     | | |||||| |||||||||| |  |||||| || |||| |||||||||||||  |||||||| ||||||    
T  36326571 -tctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 36326640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 32414709 - 32414816
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaa----gtctatataaatattgtatgtcttattatgagaatcaatgaaaaa 109  Q
    ||||||| | ||||||||| |||||||| |||||||| ||||| |||||||    ||||||||||| |||||||| ||||||| |||||||||| |||||    
T  32414709 gataatattaagtatgttatggtgcacttatcttattttgagtttgcacaaacaagtctatataaacattgtatgccttattacgagaatcaataaaaaa 32414808  T
Q  110 tataatga 117  Q
    ||||||||    
T  32414809 tataatga 32414816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 182
Target Start/End: Original strand, 14029319 - 14029469
Alignment:
Q  42 tatcttattatgagtatgcacaagtctatataaatattgtatgtctt----atta-----tgagaatcaatgaaaaatataatgaatttatttctctctt 132  Q
    |||||||| ||||||||||||||| ||||||||| ||| ||||||||    ||||     | |||||||||||||||||||||||||||  || ||| ||    
T  14029319 tatcttataatgagtatgcacaagcctatataaacattatatgtcttgtggattagaaatttagaatcaatgaaaaatataatgaatttcctt-tctttt 14029417  T
Q  133 atctctagttttt--ctctaatttatggaatgtgatccctacttaaattggg 182  Q
    ||||||||||| |  |||||| || |||| |||||||||||||  |||||||    
T  14029418 atctctagtttctcactctaaattctggagtgtgatccctactcgaattggg 14029469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 42513239 - 42513062
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatata 113  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||||||||||    
T  42513239 gataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatata 42513140  T
Q  114 atgaatttatttctctcttatctctagttttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
    |||||||| | | |||||| |||||||||| |  ||||||||| |||| |||||||||||||  |||||||| ||||||    
T  42513139 atgaattt-tctttctcttttctctagtttctccctctaatttctggagtgtgatccctactcgaattgggtcgtatca 42513062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 41712267 - 41712364
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaata 111  Q
    ||||||| | |||||||||||||||||| || |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  41712267 gataatattaagtatgttagggtgcacttattttattatgagtaggcacaagtctatataagtattgtatgtcttattatgagaatgaatgaaaaata 41712364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 38572388 - 38572287
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatata 113  Q
    ||||||| |||||| |||||||| |||| |||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||| ||| |||||||||    
T  38572388 gataatattgagtaagttagggtacacttatcttattatgaatatgcccaagtctatataaacattgtatgccttattatgagaattaataaaaaatata 38572289  T
Q  114 at 115  Q
    ||    
T  38572288 at 38572287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 49017108 - 49017258
Alignment:
Q  23 tgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaattt 121  Q
    ||||||||||| | |||||| |||||||||||| ||| ||||||| | |||||  |||||||| |||||||||||| | |||||||||||||||  ||||    
T  49017108 tgagtatgttatgatgcacttatcttattatgactatccacaagtttgtataagcattgtatgccttattatgagacttaatgaaaaatataatatattt 49017207  T
Q  122 atttctctcttatctctagtt--tttctctaatttatggaatgtgatcccta 171  Q
     | | ||| ||||||||||||  | ||||||||||||||| |||||||||||    
T  49017208 -tctttcttttatctctagtttctctctctaatttatggagtgtgatcccta 49017258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 30456308 - 30456456
Alignment:
Q  42 tatcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagt 141  Q
    |||||||||||||||||||| ||||||||||||  ||| |||| ||||| || ||||  ||||||||||||||||||||| | | |||||| ||||||||    
T  30456308 tatcttattatgagtatgca-aagtctatataagcattatatgccttatgattagaacgaatgaaaaatataatgaattt-tctttctcttttctctagt 30456405  T
Q  142 tttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
    || |  |||||| || |||| |||||||||||||  |||||||| ||||||    
T  30456406 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 30456456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 6102956 - 6103056
Alignment:
Q  95 agaatcaatgaaaaatataatgaatttatttctctcttatctctagtttt-tctc-taatttatggaatgtgatccctacttaaattgggtagtatcaat 192  Q
    ||||||||||||||||||||||||||| |||  || |||||||||||||| |||| ||||||||||| |||||| ||||||  |||||||| ||||||||    
T  6102956 agaatcaatgaaaaatataatgaattttttttgcttttatctctagttttctctcttaatttatggagtgtgattcctactcgaattgggttgtatcaat 6103055  T
Q  193 a 193  Q
    |    
T  6103056 a 6103056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 11206499 - 11206604
Alignment:
Q  69 atataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagttttt--ctctaatttatggaatgtgat 166  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||| | | |||||| |||||||||| |  |||||| || |||| ||||||    
T  11206499 atataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattt-tctttctcttttctctagtttctccctctaaattctggagtgtgat 11206597  T
Q  167 ccctact 173  Q
    | |||||    
T  11206598 ctctact 11206604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 30452703 - 30452847
Alignment:
Q  42 tatcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagt 141  Q
    |||||||||||||||||||| |||||||||||    ||||||| ||||| || ||||  ||||||||||||||||||||| | | |||||| ||||||||    
T  30452703 tatcttattatgagtatgca-aagtctatata----ttgtatgccttatgattagaacgaatgaaaaatataatgaattt-tctttctcttttctctagt 30452796  T
Q  142 tttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
    || |  |||||| || |||| |||||||||||||  |||||||| ||||||    
T  30452797 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 30452847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 4834692 - 4834870
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatata 113  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||  |||||||| || ||||| |||||||||||||||||||    
T  4834692 gataatattgagtatgttagggtgcacttatcttattatgagtatgcataagtctatataagcattgtatgcctcattattagaatcaatgaaaaatata 4834791  T
Q  114 atgaatttatttctctcttatctctagttttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatcaa 191  Q
    |||||||| | | |||||| |||||||||| |  |||||| || |||| ||||||||||||| ||||||||| |||||||    
T  4834792 atgaattt-tctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcaaattgggtcgtatcaa 4834870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 33242822 - 33242998
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatata 113  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  33242822 gataatattgagtatgttagg-tgcacttatcttattatgagtatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaaatata 33242920  T
Q  114 atgaatttatttctctcttatctctagtt--tttctctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
    |||||||| ||| ||| |||| |||||||  | |||||||||| |||| ||||||| |||||  |||||||| ||||||    
T  33242921 atgaatttcttt-tcttttatttctagtttctctctctaatttctggagtgtgatctctactcgaattgggtcgtatca 33242998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 7415612 - 7415789
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatata 113  Q
    ||||||| ||||||||||| |||||||| |||||||||||||||  || ||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  7415612 gataatattgagtatgttatggtgcacttatcttattatgagtacacataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatata 7415711  T
Q  114 atgaatttatttctctcttatctctagtt--tttctctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
    |||||||| | | |||||| |||||||||  | |||||||||| |||| ||||||||||||| || |||| | ||||||    
T  7415712 atgaattt-tctttctcttttctctagtttctctctctaatttctggagtgtgatccctactcaagttggatcgtatca 7415789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 7426559 - 7426736
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatata 113  Q
    ||||||| ||||||||||| |||||||| ||||||||| |||||  || ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  7426559 gataatattgagtatgttatggtgcacttatcttattaagagtacacataagtctatataaacattgtatgccttattatgagaatcaatgaaaaatata 7426658  T
Q  114 atgaatttatttctctcttatctctagtttttc--tctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
    |||||||| | | |||||| |||||| ||| ||  |||||||| |||| |||||||||||||  |||||||| ||||||    
T  7426659 atgaattt-tctttctcttttctctaatttctctttctaatttctggagtgtgatccctactcgaattgggtcgtatca 7426736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 7422628 - 7422797
Alignment:
Q  23 tgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaattt 121  Q
    ||||||||||| |||||||| ||||||||| |||||  || ||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  7422628 tgagtatgttatggtgcacttatcttattaagagtacacataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaattt 7422727  T
Q  122 atttctctcttatctctagtt--tttctctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
     | | |||||| |||||||||  | |||||||||| | || |||||||||||||  |||||||| ||||||    
T  7422728 -tctttctcttttctctagtttctctctctaatttcttgagtgtgatccctactcgaattgggtcgtatca 7422797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 13886589 - 13886691
Alignment:
Q  89 attatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagttttt--ctctaatttatggaatgtgatccctacttaaattgggtagt 186  Q
    ||||| ||||||||||||||||||||||||||| | | |||||| |||||||||| |  |||||| || |||| ||||||||||||| ||||||||| ||    
T  13886589 attattagaatcaatgaaaaatataatgaattt-tctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcaaattgggtcgt 13886687  T
Q  187 atca 190  Q
    ||||    
T  13886688 atca 13886691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 8123501 - 8123682
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatata 113  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||||||||||    
T  8123501 gataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatata 8123600  T
Q  114 atgaatttatttctctcttatctctagttttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatcaatat 194  Q
    |||||||| | | |||||| ||| || ||| |  ||||||||| || | |||||||| ||||  |||||||| ||||||||||    
T  8123601 atgaattt-tctttctcttttctttaatttctccctctaatttctgaagtgtgatccatactcgaattgggtcgtatcaatat 8123682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 671435 - 671542
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatata 113  Q
    ||||||| |||||| |||||||| |||| |||||||||||||||||||||||| |||||||  |||||||| |||||||||||||| |||||||||||||    
T  671435 gataatattgagtaggttagggtacacttatcttattatgagtatgcacaagtttatataatcattgtatgccttattatgagaattaatgaaaaatata 671534  T
Q  114 atgaattt 121  Q
    ||||||||    
T  671535 atgaattt 671542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 41709523 - 41709651
Alignment:
Q  64 agtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagttttt--ctctaatttatggaat 161  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | | |||||| ||| |||||| |  |||||| || |||| |    
T  41709523 agtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattt-tctttctcttttctatagtttctccctctaaattctggagt 41709621  T
Q  162 gtgatccctacttaaattgggtagtatcaa 191  Q
    |||||| |||||  |||||||| |||||||    
T  41709622 gtgatctctactcgaattgggtcgtatcaa 41709651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 46 - 190
Target Start/End: Original strand, 24108702 - 24108848
Alignment:
Q  46 ttattatgagtatgca-caagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagttt- 143  Q
    |||||||||||||||| |||||||||||||  |||||||||||||| || |||| ||||||||||||||||||||||  || | | || ||||||||||     
T  24108702 ttattatgagtatgcaacaagtctatataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaatttccttttgt-ttgtctctagtttt 24108800  T
Q  144 -ttctctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
     |||  |||||| |||| |||||||||||||  |||||||| ||||||    
T  24108801 cttccttaatttctggagtgtgatccctactcgaattgggtcgtatca 24108848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 10321963 - 10321869
Alignment:
Q  96 gaatcaatgaaaaatataatgaatttatttctctcttatctctagtttttctct--aatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
    |||||||||||||| |||||||||||  || |||||||||||||| || |||||  || ||||||| ||||||||||||| ||||||||| ||||||    
T  10321963 gaatcaatgaaaaa-ataatgaatttcctt-tctcttatctctagcttatctctctaaattatggagtgtgatccctactcaaattgggtcgtatca 10321869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 8e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 23405624 - 23405475
Alignment:
Q  42 tatcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagt 141  Q
    ||||||| |||| |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| | | |||||| ||||||||    
T  23405624 tatcttactatgtgtatgcacaagtctatctaaacattgtatgccttattatgagaatcaatgaaaaatataatgaattt-tctttctcttttctctagt 23405526  T
Q  142 tttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
    || |  |||||| || |||| |||||||||||||| |||||||| ||||||    
T  23405525 ttctccctctaaattctggagtgtgatccctacttgaattgggtcgtatca 23405475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 18584063 - 18583886
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatata 113  Q
    ||||||| |||||||||||||||||| | ||| |||||| |||||||||||||||||||||  ||||||||  |||||||||||||||||||||||||||    
T  18584063 gataatattgagtatgttagggtgcagttatcgtattataagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatata 18583964  T
Q  114 atgaatttatttctctcttatctctagtttt-tctc-taatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
     |||||||  || ||| |||||||||||||| |||| |||||| |||| ||| ||| |||||  |||||||| ||||||    
T  18583963 ctgaatttcctt-tcttttatctctagttttctctcttaatttctggagtgtaatctctactcgaattgggtcgtatca 18583886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 13087701 - 13087763
Alignment:
Q  64 agtctatataaatattgtatgtcttattatgagaatcaatg-aaaaatataatgaatttattt 125  Q
    ||||||||||| ||||||||| |||||||||||||| |||| ||||||| |||||||||||||    
T  13087701 agtctatataagtattgtatgccttattatgagaatgaatgaaaaaatacaatgaatttattt 13087763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 9893800 - 9893886
Alignment:
Q  98 atcaatgaaaaatataatgaatttatttctctcttatctctagtt--tttctctaatttatggaatgtgatccctacttaaattgggt 183  Q
    |||||||||||||||||||||||| | | ||| | ||||||||||  |||| |||| ||||| | |||||| |||||| |||||||||    
T  9893800 atcaatgaaaaatataatgaattt-tctttctttcatctctagtttctttcactaaattatgcagtgtgatacctactcaaattgggt 9893886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 44761971 - 44762117
Alignment:
Q  45 cttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagtttt 144  Q
    |||| |||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||| ||| ||||||     
T  44761971 cttactatgtgtatgcacaagtctatataaacattgtatgccttattatgaaaatcaatgaaaaatataatgaattt-tttttctcttttctatagtttc 44762069  T
Q  145 t--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
    |  |||||| || |||| |||||||||||||  |||||||| ||||||    
T  44762070 tccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 44762117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 44765278 - 44765424
Alignment:
Q  45 cttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagtttt 144  Q
    |||| |||| ||||||||||||||||||||| |||||||  |||||||||| ||||||||||||||||||||||||| | | |||||| ||| ||||||     
T  44765278 cttactatgtgtatgcacaagtctatataaacattgtattccttattatgaaaatcaatgaaaaatataatgaattt-tctttctcttttctatagtttc 44765376  T
Q  145 t--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
    |  |||||| || |||| ||| |||||||||  |||||||| ||||||    
T  44765377 tccctctaaattctggagtgtaatccctactcgaattgggtcgtatca 44765424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 42 - 173
Target Start/End: Complemental strand, 45327553 - 45327421
Alignment:
Q  42 tatcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagt 141  Q
    ||||||| |||| ||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||||| ||||| ||| ||| ||||||||| |    
T  45327553 tatcttactatgtgtatgcacaagtctatataagcattgtatgtcttattatgagaaaaaatgaaaaatataataaatttcttt-tcttttatctctaat 45327455  T
Q  142 ttt-tctc-taatttatggaatgtgatccctact 173  Q
    ||| |||| |||||| |||| |||||||||||||    
T  45327454 tttctctcttaatttctggagtgtgatccctact 45327421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 31211857 - 31211963
Alignment:
Q  85 tcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagtttt-tctc-taatttatggaatgtgatccctacttaaattggg 182  Q
    ||||||||||||||||||||||||||||||||||||| | | ||| |||||||||||||| |||| |||||| |||| |||||||||||||  ||||||     
T  31211857 tcttattatgagaatcaatgaaaaatataatgaattt-tctttcttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattgga 31211955  T
Q  183 tagtatca 190  Q
    | ||||||    
T  31211956 tcgtatca 31211963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 31211662 - 31211731
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtat 83  Q
    ||||||| |||||||||||| ||||||| |||||| |||||||||||| |||||||||||| ||||||||    
T  31211662 gataatattgagtatgttagagtgcacttatcttaatatgagtatgcataagtctatataagtattgtat 31211731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 36050668 - 36050813
Alignment:
Q  45 cttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagtttt 144  Q
    |||| |||| ||||||||||||||||||||| |||||||| |||||||||||    ||||||||||||||||||||| ||| ||| ||||||||||||||    
T  36050668 cttactatgtgtatgcacaagtctatataaacattgtatgccttattatgag-ggaaatgaaaaatataatgaatttcttt-tcttttatctctagtttt 36050765  T
Q  145 -tc-tctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
     || | |||||| |||| |||||||||||||  |||||||| ||||||    
T  36050766 ctcttttaatttttggagtgtgatccctactcgaattgggtcgtatca 36050813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 36053927 - 36054072
Alignment:
Q  45 cttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagtttt 144  Q
    |||| |||| ||||||||||||||||||||| |||||||| |||||||||||    ||||||||||||||||||||| ||| ||| ||||||||||||||    
T  36053927 cttactatgtgtatgcacaagtctatataaacattgtatgccttattatgag-ggaaatgaaaaatataatgaatttcttt-tcttttatctctagtttt 36054024  T
Q  145 -tc-tctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
     || | |||||| |||| |||||||||||||  |||||||| ||||||    
T  36054025 ctcttttaatttttggagtgtgatccctactcgaattgggtcgtatca 36054072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 27387621 - 27387770
Alignment:
Q  42 tatcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagt 141  Q
    |||||||||| ||| ||||||||||||||||||  |||||||| || ||||| || |  ||||||||||||||||||||| ||| ||  | |||||||||    
T  27387621 tatcttattacgaggatgcacaagtctatataagcattgtatgcctcattattagcaggaatgaaaaatataatgaatttcttt-tccttcatctctagt 27387719  T
Q  142 tttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 190  Q
    || |  |||||| || |||| |||||||||||||  |||||||| ||||||    
T  27387720 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 27387770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 20441096 - 20441042
Alignment:
Q  15 gataatactgagtatgttagggtgcact-atcttattatgagtatgcacaagtct 68  Q
    ||||||| |||| |||| |||||||||| ||||||||||||||||||||||||||    
T  20441096 gataatattgagcatgtcagggtgcacttatcttattatgagtatgcacaagtct 20441042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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