View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_low_5 (Length: 554)
Name: NF21078_low_5
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 11 - 535
Target Start/End: Complemental strand, 36151640 - 36151116
Alignment:
| Q |
11 |
cacagaccctgcagcagaaacatcagcaggtaaatccttgccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgttttt |
110 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151640 |
cacagaccctgcagcagaaatatcagcaggtaaatccttgccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgttttt |
36151541 |
T |
|
| Q |
111 |
ccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccctatcaacttgat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
36151540 |
ccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgat |
36151441 |
T |
|
| Q |
211 |
aaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatacttacttgagtgccaccataagtagtgacgtt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
36151440 |
aaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatactaacttgactgccaccataagtagtgacgtt |
36151341 |
T |
|
| Q |
311 |
cagttgaagcctagcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151340 |
cagttgaagcctagcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgt |
36151241 |
T |
|
| Q |
411 |
aagagttcgactttttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgaagaatcttctggcgcaaaaatggttaacccaccgg |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
36151240 |
aagagttcgactttttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgcagaatcttctggtgcaaaaatggttaacccaccgg |
36151141 |
T |
|
| Q |
511 |
aacctgatggcgatgataccagctg |
535 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
36151140 |
aacctgatggcgatgataccagctg |
36151116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 11 - 535
Target Start/End: Complemental strand, 36155026 - 36154502
Alignment:
| Q |
11 |
cacagaccctgcagcagaaacatcagcaggtaaatccttgccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgttttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36155026 |
cacagaccctgcagcagaaacatcagcaggtaaatccttaccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgttttt |
36154927 |
T |
|
| Q |
111 |
ccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccctatcaacttgat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
36154926 |
ccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgat |
36154827 |
T |
|
| Q |
211 |
aaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatacttacttgagtgccaccataagtagtgacgtt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
36154826 |
aaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagccatactaacttgactgccaccataagtagtgacgtt |
36154727 |
T |
|
| Q |
311 |
cagttgaagcctagcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36154726 |
cagttgaagcctagcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgt |
36154627 |
T |
|
| Q |
411 |
aagagttcgactttttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgaagaatcttctggcgcaaaaatggttaacccaccgg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |
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|
| T |
36154626 |
aagagttcgactttttgtctatcagtgagggagttgaggaaccctgctttgagtttggagaatgcagaatcttctggtgcaaaaatggttaaccctccgg |
36154527 |
T |
|
| Q |
511 |
aacctgatggcgatgataccagctg |
535 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
36154526 |
aacctgatggcgatgataccagctg |
36154502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 156 - 508
Target Start/End: Complemental strand, 5274006 - 5273651
Alignment:
| Q |
156 |
ggagccttagccggaagaacaagatcaagaggcataagtaccctatcaacttgataaatagcaagtttgctgtcggtataaacagtaccggtaacggtag |
255 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| | ||| ||| | ||||| ||||| ||||| |||||| |||| || ||||| || || |||||||| | |
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|
| T |
5274006 |
ggagctttagcaggaagcacaagatcaagaggaacaagaaccttgtcaacctgatatatagctagtttgttgtctgtgtaaactgttccagtaacggttg |
5273907 |
T |
|
| Q |
256 |
cattgactgctccggtagccatacttacttgagtgccaccataagtagtgacgttcagttgaagcc---tagcatcatcaccggcttgtgtttgaacagg |
352 |
Q |
| |
|
|||| || | || || | ||| || || || | || ||| |||| || || || ||||| |||| | || ||||||||||||||||||||||| || |
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|
| T |
5273906 |
cattaaccgtgccagttgtcatgctgacatggctaccgccagaagtggttacattaagttgtagccttttggcgtcatcaccggcttgtgtttgaaccgg |
5273807 |
T |
|
| Q |
353 |
gttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgtaagagttcgactttttgtctatcagtgagggagttgaggaac |
452 |
Q |
| |
|
|||||||||||| |||||||| || || || | |||||| | ||| | ||| || ||||| ||||| ||||| ||||| ||| ||||||| || ||||| |
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|
| T |
5273806 |
gttggttaaggtgtcgaagttcgagattgagatgaatgaggaaagtgtgtggaattgtaacagttctactttgtgtctgtcactgagggaattaaggaaa |
5273707 |
T |
|
| Q |
453 |
cctgctttgagtttggagaatgaagaatcttctggcgcaaaaatggttaacccacc |
508 |
Q |
| |
|
|||| ||||||||| || || | | |||||||| ||||||| |||||| ||||| |
|
|
| T |
5273706 |
cctggtttgagttttgaaaaggcattgtcttctggtgcaaaaagggttaagccacc |
5273651 |
T |
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Back To:
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