View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_low_6 (Length: 497)
Name: NF21078_low_6
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 215 - 486
Target Start/End: Complemental strand, 46086747 - 46086476
Alignment:
| Q |
215 |
aggtgcaaattggatctcattcctttacgtatgattatgtgtatggtagcacgggacaaccttcatctacgatttacaatgattgtgtagcaccgctcgt |
314 |
Q |
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| T |
46086747 |
aggtgcaaattggatctcattcctttacgtatgattatgtgtatggtagcacgggacaaccttcatctactatttacgatgattgtgtagcaccgctcgt |
46086648 |
T |
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| Q |
315 |
tgatgcacttttcaatggatataatgccacggttctcgcttatggtcaggtataattttcatttcttggattttttgttatgtaagccttatgattacga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
46086647 |
tgatgcacttttcaatggatataatgccacggttctcgcttatggtcaggtataattttcatttcttggattttttgttacgtaagccttatgattgcga |
46086548 |
T |
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| Q |
415 |
aaaacttatttgagaaacttatgctatatatttattcgacgtgtgaattgtaattgagcattttcccttcat |
486 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
46086547 |
aaaacttatttgagaaacttatgctatatatttattctacgtgtgaattgtaattgagcattttcccctcat |
46086476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 46086942 - 46086822
Alignment:
| Q |
19 |
aacacagattccacacaaagcgtgcgagttgccgttaacattcggcctctgatcacgtccgaacttctccttggttgcacagattgcatttctgttgttc |
118 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46086942 |
aacacagattccacacagagcgtgcgagttgccgtcaacattcggcctctgatcacgtccgaacttctccttggttgcacagattgcatttctgttgttc |
46086843 |
T |
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| Q |
119 |
ctggcgaacctcaggtgctac |
139 |
Q |
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| T |
46086842 |
ctggcgaacctcaggtgctac |
46086822 |
T |
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