View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_low_7 (Length: 419)
Name: NF21078_low_7
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 15 - 401
Target Start/End: Original strand, 18663495 - 18663881
Alignment:
| Q |
15 |
caaaggtggacagtacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18663495 |
caaaggtggacagtacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaa |
18663594 |
T |
|
| Q |
115 |
ttctcttcccacaagatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattactctgatggtactacgagccggactg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18663595 |
ttctcttcccacaagatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattactctgatggtactacgagccggactg |
18663694 |
T |
|
| Q |
215 |
ttaaggagacccttagcaatagcaagtctctcactgtggccaaggagagcatcttctttatcttcctggtctacgtcatgtaaacaaaatcttgtctctg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18663695 |
ttaaggagacccttagcaatagcaagtctctcactgtggccaaggagagcatcttctttatcttcctggtctacgtcatgtaaacaaaatcttgtctctg |
18663794 |
T |
|
| Q |
315 |
caatatagccagcttctttcatctgcaccctcaaacgtctaagcaaaacatagatcatgttattttctggaagtgaagtatctcctg |
401 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18663795 |
caatatagccagcttctttcatctgcaccctcaaacgtctaagcaaaacatagatcatgttattttctggaagtgaagtatctcctg |
18663881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 15 - 401
Target Start/End: Complemental strand, 15080333 - 15079947
Alignment:
| Q |
15 |
caaaggtggacagtacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080333 |
caaaggtggacagtacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaa |
15080234 |
T |
|
| Q |
115 |
ttctcttcccacaagatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattactctgatggtactacgagccggactg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080233 |
ttctcttcccacaagatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattactctgatggtactacgagccggactg |
15080134 |
T |
|
| Q |
215 |
ttaaggagacccttagcaatagcaagtctctcactgtggccaaggagagcatcttctttatcttcctggtctacgtcatgtaaacaaaatcttgtctctg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15080133 |
ttaaggagacccttagcaatagcaagtctctcactgtggccaaggagagcatcttctttatcttcctggtctacgtcatgtaaacaaaatcttgtctctg |
15080034 |
T |
|
| Q |
315 |
caatatagccagcttctttcatctgcaccctcaaacgtctaagcaaaacatagatcatgttattttctggaagtgaagtatctcctg |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15080033 |
caatatagccagcttctttcatctgcaccctcaaacgtctaagcaaagcatagatcatgttattttctggaagtgaagtatctcctg |
15079947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 28 - 361
Target Start/End: Original strand, 7448529 - 7448859
Alignment:
| Q |
28 |
tacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaattctcttcccaca |
127 |
Q |
| |
|
|||||||||| || |||| |||||||| |||| ||||||||||||||||||||||| ||| |||||||||| | ||||||||| |||||||||||| |
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| T |
7448529 |
tacctaggttcatattcaaaaataatccttgcaagagcatagcccatttttaaaatggtggcaccttttagctt---ggatgatgagttctcttcccacg |
7448625 |
T |
|
| Q |
128 |
agatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattactctgatggtactacgagccggactgttaaggagaccct |
227 |
Q |
| |
|
| | |||||||||||||| |||||||||||||||| ||||| ||| | ||||||||||||||| || || |||||| |||||| ||| |||||| | |
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|
| T |
7448626 |
atcttagaaataatcttcagtgcagtatgacaatcaggacaaatacgaaaattcttaattactctaatagttgaacgagcaggactgctaaagagacctt |
7448725 |
T |
|
| Q |
228 |
tagcaatagcaagtctctcactgtggccaaggagagcatcttctttatcttcctggtctacgtcatgtaaacaaaatcttgtctctgcaatatagccagc |
327 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||| |||||||||| |||||| ||||| |||||| || | |||| |||||||||||||||||| | |
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| T |
7448726 |
tagcaacagcaagtctctcactgtgggcaaggagaacatcttctttgccttcctcgtctatgtcatgcaacgcatatctcgtctctgcaatatagccatc |
7448825 |
T |
|
| Q |
328 |
ttctttcatctgcaccctcaaacgtctaagcaaa |
361 |
Q |
| |
|
||||||||| ||| | ||||||| |||||||||| |
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| T |
7448826 |
ttctttcatttgctctctcaaacctctaagcaaa |
7448859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 15 - 357
Target Start/End: Original strand, 7534062 - 7534404
Alignment:
| Q |
15 |
caaaggtggacagtacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaa |
114 |
Q |
| |
|
||||| |||| |||||||| ||||||||||||||||| | ||||||||| | |||||| || | ||| ||||||||||||||||||||||||||||| |
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| T |
7534062 |
caaagatggatagtacctaaattaatgttcaccaataaccatggcaggagcacaacccattattcatatggtggaaccttttagcatctcggatgatgaa |
7534161 |
T |
|
| Q |
115 |
ttctcttcccacaagatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattactctgatggtactacgagccggactg |
214 |
Q |
| |
|
||||||||||||||| | |||||||| ||||| |||||| |||||||||||||||| |||| |||||| ||||||| | || ||| |||| || |||| |
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|
| T |
7534162 |
ttctcttcccacaagcttagaaataaacttcactgcagtgtgacaatcaccacaaaaacggcgattctgaattactttaatagtagaacgaaccttactg |
7534261 |
T |
|
| Q |
215 |
ttaaggagacccttagcaatagcaagtctctcactgtggccaaggagagcatcttctttatcttcctggtctacgtcatgtaaacaaaatcttgtctctg |
314 |
Q |
| |
|
|||| |||||| | ||||| ||| |||||| || ||||| ||||||||||||||||||| |||||||||||| |||||| || | | || |||| |
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|
| T |
7534262 |
ttaaagagaccttgagcaacagccagtctcacattgtgggcaaggagagcatcttctttgccttcctggtctatgtcatgcaacacatgccccgtatctg |
7534361 |
T |
|
| Q |
315 |
caatatagccagcttctttcatctgcaccctcaaacgtctaag |
357 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||| |||||| |
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|
| T |
7534362 |
caatatagccagcttccttcatttgcactctcaaacctctaag |
7534404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 159
Target Start/End: Complemental strand, 24416966 - 24416850
Alignment:
| Q |
43 |
tcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaattctcttcccacaagatcagaaataatc |
142 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||||||||||||||||| |||| ||||| ||||| || ||||||||||| | || ||||||||| |
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| T |
24416966 |
tcaccaataatcccgtccggagcatagtccatttttaaaatgatggaaccctttaagatctcagatgacaaactctcttcccactatttccgaaataatc |
24416867 |
T |
|
| Q |
143 |
ttcaatgcagtatgaca |
159 |
Q |
| |
|
|||| | |||||||||| |
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|
| T |
24416866 |
ttcattacagtatgaca |
24416850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 24416701 - 24416653
Alignment:
| Q |
317 |
atatagccagcttctttcatctgcaccctcaaacgtctaagcaaaacat |
365 |
Q |
| |
|
|||||||||| || |||||| | ||| |||||||||||||||||||||| |
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|
| T |
24416701 |
atatagccagtttatttcatttacactctcaaacgtctaagcaaaacat |
24416653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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