View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_low_9 (Length: 405)
Name: NF21078_low_9
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 9452811 - 9453031
Alignment:
| Q |
17 |
tagtacataaattagatttggttagataaataaaactttgtcaaaa-aacaatttgagatggcaaagatattttataagaaaaatgctagataccgcgag |
115 |
Q |
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| T |
9452811 |
tagtacataaattagatttggttagaaaaataaaactttgtcaaaaaaacaatttgagatggcaaagatattttataagaaaaatgctagataccgcgag |
9452910 |
T |
|
| Q |
116 |
aggatttttcacaaaagcttccagaatgagttgacaacacaccatccattggatcttatatttaatgaattcaccgcttcatcttaaaagagcaacaact |
215 |
Q |
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| T |
9452911 |
aggatttttcacgaaagcttctagaatgagatggcaacacaccatccattagatcttatatttaatgaatttaccgcttcatcttaaaagagcaacaa-t |
9453009 |
T |
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| Q |
216 |
agggttcataaacaagtaaata |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
9453010 |
agggttcataaacaagtaaata |
9453031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 94 - 287
Target Start/End: Original strand, 46424083 - 46424267
Alignment:
| Q |
94 |
gaaaaatgctagataccgcgagaggatttttcacaaaagcttccagaatgagttgacaacacaccatccattggatcttatatttaatgaattcaccgct |
193 |
Q |
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| T |
46424083 |
gaaaaatgctagatacagcaagagggtttttcacgaaagc-------atgagttgacaacacaccatccattggatcttatatttaatgaattcatcgct |
46424175 |
T |
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| Q |
194 |
tcatcttaaaagagcaacaactagggttcataaacaagtaaataataataacacaaagcacgcaagtgttttacggccagtaattgcttttaat |
287 |
Q |
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| T |
46424176 |
tcatcttaaaagagcaacaac-atggtttttaaacaagtaaataacaatagcacaaagcacacacatgatttccggccagtaatt-cttttaat |
46424267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 21546664 - 21546588
Alignment:
| Q |
17 |
tagtacataaattagatttggttagataaataaaactttgtcaaaaaacaatttgagatggcaaagatattttataa |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
21546664 |
tagtacataaattagatttggttagataaataaaactttgtcaaaaaacaatttgatatgacaaagatattttataa |
21546588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 21546597 - 21546561
Alignment:
| Q |
349 |
tattttataatttctaatgaatatttgacaataaagc |
385 |
Q |
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| T |
21546597 |
tattttataatttctaatgaatatttgacagtaaagc |
21546561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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