View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21079_high_8 (Length: 228)
Name: NF21079_high_8
Description: NF21079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21079_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 46555149 - 46555351
Alignment:
| Q |
10 |
cgaagaaaatatcattcacataataccaaccattgacaatctatcaacttgattgaactatatggaaaaacaaaccatcgacaggaaattcaagactgca |
109 |
Q |
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| T |
46555149 |
cgaaaaaaatatcattcacataataccaaccattgacaatctatcaacttgattgaactatatggaaaaacaaaccatcgacaggaaattcaagactgca |
46555248 |
T |
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| Q |
110 |
taatacacaatctccgagtcgcagaatactatcaaattcaaatttgatcatttgtctggtcttcaatttagcatcccggttcgatttaaactcagtggaa |
209 |
Q |
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| T |
46555249 |
taatacacaatctccgagtcgcagaatgctatcaaattcaaatttgatcatttatctggtcttcaatttagcatcccggttcgatttaaactcagtggaa |
46555348 |
T |
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| Q |
210 |
tac |
212 |
Q |
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||| |
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| T |
46555349 |
tac |
46555351 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 10822207 - 10822256
Alignment:
| Q |
113 |
tacacaatctccgagtcgcagaatactatcaaattcaaatttgatcattt |
162 |
Q |
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| T |
10822207 |
tacaccatctccgagtcgtagaatattatcaaatttaaatttgatcattt |
10822256 |
T |
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