View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21079_low_2 (Length: 621)
Name: NF21079_low_2
Description: NF21079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21079_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 12 - 603
Target Start/End: Complemental strand, 35128400 - 35127809
Alignment:
| Q |
12 |
catcatcatttcttgattgaactgtatccttgcatacttttgaatcttcttgactcctcatttctccttcagtccacaaatcatgtttgtcttcctgttc |
111 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35128400 |
catcatcatttcttgattgaactgtatcctcgcatacttttgaatcttcttgactcctcatttctccttcagtccacaaatcatgtttgtcttcctgttc |
35128301 |
T |
|
| Q |
112 |
tgcttccacattttcaacaactgaaccaatatcttgatggctttcacttgttccactggaaactccttttgcatattctcctctcatatcatttctaccc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35128300 |
tgcttccacattttcaacaactgaaccaatatcttgatggctttcacttgttccactggaaactccttttgcatattctcctctcatatcatttctaccc |
35128201 |
T |
|
| Q |
212 |
tcatctctaattttttctaatagcccttttgtttctttatgcattgcttcctcctctatatcaccctcttcgacctcatcctcacattcctctaaaacaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
35128200 |
tcatctctaattttttctaatagcccttttgtttctttatgcattgcttcctcctctatatcaccctcttccacctcatctccacattcctctaaaacaa |
35128101 |
T |
|
| Q |
312 |
catttgtgacaccaaactcgaagggttctttaaattcttcactttcatcaaacccttccataattgtacctccactcatcggcttctcatcatcaagctt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35128100 |
catttgtgacaccaaactcgaagggttctttaaattcttcactttcatcaaacccttccataattgtacctccactcatcggcttctcatcatcaagctt |
35128001 |
T |
|
| Q |
412 |
atgtggtgaaggttcctcctcagagaaataatcagtgctgtctttctcagaaccattgtactggatgacatcgttggcatcacttgaatgtgataattcc |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35128000 |
atgtggtgaaggttcctcctcagagaaataatcagtgctgtctttctcagaaccattgtactggatgacatcgttggcatcacttgaatgtgataattcc |
35127901 |
T |
|
| Q |
512 |
ggctcgaactcctcgttcacagccctttgcccataatcattatccaatatgacactttcctcgctaacatcaaccatttcattgtctctctt |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35127900 |
ggctcgaactcctcgttcacagccctttgcccataatcattatccaatatcacactttcctcactaacatcaaccatttcattgtctctctt |
35127809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 35128751 - 35128636
Alignment:
| Q |
12 |
catcatcatttcttgattgaactgtatccttgcatacttttgaatcttcttgactcctcatttctccttcagtccacaaatcatgtttgtcttcctgttc |
111 |
Q |
| |
|
|||||||||||||||||||| |||| |||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35128751 |
catcatcatttcttgattgagctgtctcctcgcatacttttgaatcttcttgatttctcatttctccttcagtccacaaatcatgtttgtcttcctgtcc |
35128652 |
T |
|
| Q |
112 |
tgcttccacattttca |
127 |
Q |
| |
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|||||||||||||||| |
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| T |
35128651 |
tgcttccacattttca |
35128636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 26778813 - 26779045
Alignment:
| Q |
29 |
tgaactgtatccttgcatacttttgaatcttcttgactcctcatttctccttcagtccacaaatcatgtttgtcttcctgttctgcttccacattttcaa |
128 |
Q |
| |
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||||| || |||| ||||||| |||||||| |||| ||||||||||||| ||| ||| |||| | ||||||||||| || || ||| || |||||||| |
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| T |
26778813 |
tgaaccgtctcctagcatactcttgaatctgtttgattcctcatttctccatcaatccccaaacccagtttgtcttccagtgctacttgcatattttcaa |
26778912 |
T |
|
| Q |
129 |
caactgaaccaatatcttgatggct-ttcact-----tgttccactggaaactccttttgcatattctcctctcatatcatttctaccctcatctctaat |
222 |
Q |
| |
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|||||| ||||||||| |||| | ||||| ||||||||| | || |||||||||| |||||||||||||||| | |||||||||||||| || |
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| T |
26778913 |
caactggaccaatatcatgattcatgatcactctcactgttccactaggaatcccttttgcatcttctcctctcatatcagtcctaccctcatctctgat |
26779012 |
T |
|
| Q |
223 |
tt------tttctaatagcccttttgtttcttt |
249 |
Q |
| |
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|| ||||||||||||||||||||||||| |
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|
| T |
26779013 |
tttttttctttctaatagcccttttgtttcttt |
26779045 |
T |
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