View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21079_low_3 (Length: 589)
Name: NF21079_low_3
Description: NF21079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21079_low_3 |
 | |
|
| [»] scaffold1640 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 543
Target Start/End: Original strand, 31979827 - 31980348
Alignment:
| Q |
13 |
cataggatgaaaagtgtttgttgctgcttcaacatgatgttgttgtggtgtttgaaactgtataggttccatttgttgccaataagggtaatgatgttga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31979827 |
cataggatgaaaagtgtttgttgctgcttcaacatgatgttgttgtggtgtttgaaactgtataggttccatttgttgccaataagggtaatgatg---- |
31979922 |
T |
|
| Q |
113 |
tgatgatgaaagaaaccaccttgttcatgttgttcagaaacatatgactgtggtggtggtgaaaaaggaacaacgttgttggtg------gtggtgttga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
31979923 |
--------aaagaaaccaccttgttcatgttgttcagaaacatatgactgtggtggtggtgaaaaaggaacaacgttgttgttgttgttggtggtgttga |
31980014 |
T |
|
| Q |
207 |
ggttgatggtttttgatctagcagcagctctttcttgtttgtgagcattttggtgaccaccaagagcttgagaagtgtagaattttcggtgacaatattg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31980015 |
ggttgatggtttttgatctagcagcagctctttcttgtttgtgagcattttggtgaccaccaagagcttgagaagtgtagaattttcggtgacaatattg |
31980114 |
T |
|
| Q |
307 |
acactgaaaaattcttgaaggttgttgtggctgtgatgatcttctggttgttctnnnnnnnnnnnnnnnnnnnnatgatgaagtttgttgtttcatgagg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31980115 |
acactgaaaaattcttgaaggttgttgtggctgtgatgatcttctggttgttcttggtggtggtggtgatggtgatgatgaagtttgttgtttcatgagg |
31980214 |
T |
|
| Q |
407 |
aactcataaatggctgaagggtctgccatgttcagagagtgtttctgattctgagtttgtgtagtgaaagaaagaaacaaagggttttttctctgagc-a |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
31980215 |
aactcataaatggctgaagggtctgccatgttcagagagtgtttctgattctgagtttgtgtagt----gaaagaaacaaagggttttttctctgagcaa |
31980310 |
T |
|
| Q |
506 |
aacaaatgcagaagaaaataaaataatagcagagagta |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31980311 |
aacaaatgcagaagaaaataaaataatagcagagagta |
31980348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 25769311 - 25769354
Alignment:
| Q |
248 |
tgagcattttggtgaccaccaagagcttgagaagtgtagaattt |
291 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
25769311 |
tgagcattttggtgacctccaagagcttgagaagtggagaattt |
25769354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 25774892 - 25774935
Alignment:
| Q |
248 |
tgagcattttggtgaccaccaagagcttgagaagtgtagaattt |
291 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
25774892 |
tgagcattttggtgacctccaagagcttgagaagtggagaattt |
25774935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 33781999 - 33781929
Alignment:
| Q |
227 |
gcagcagctctttcttgtttgtgagcattttggtgaccaccaagagcttgagaagtgtagaattttcggtg |
297 |
Q |
| |
|
||||||||||| ||| | ||||| || || ||||| ||||||||||||||||||| |||||| || ||||| |
|
|
| T |
33781999 |
gcagcagctctctctagcttgtgtgcgttctggtggccaccaagagcttgagaagagtagaacttgcggtg |
33781929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1640 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1640
Description:
Target: scaffold1640; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 585 - 542
Alignment:
| Q |
248 |
tgagcattttggtgaccaccaagagcttgagaagtgtagaattt |
291 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
585 |
tgagcattttggtgacctccaagagcttgagaagtggagaattt |
542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University