View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21079_low_4 (Length: 448)
Name: NF21079_low_4
Description: NF21079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21079_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 7500848 - 7501196
Alignment:
| Q |
18 |
caaatgaatatttattaaaatagaaagatgagaatgagtacaagaggtactccttnnnnnnnnnnnnnnnnngtacaagaggcacaaaacccacaaaata |
117 |
Q |
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| T |
7500848 |
caaatgaatatttattaaaatagaaagatgagaatgagtacaagaggtactccctaaaaaaataaaaaataaatacaagaggcactaaacccacaaaata |
7500947 |
T |
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| Q |
118 |
tggtgaaagaaattgttgagttgaacaagctattgttttcaagctatgattcaggaaattagctttgatattgattagtgttttcagtttaatatctcct |
217 |
Q |
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| T |
7500948 |
tggtgaaagaaattgttgagttgaacaagctattgttttcaagctatgattcaggaaattagctttgatattgattagtgttttcagtttaatatctcct |
7501047 |
T |
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| Q |
218 |
ttatagttaatttatttacgtattctagctattctcannnnnnnattagc--tnnnnnnnnnctaatctcggtttattgccttcttcattctttttgann |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7501048 |
ttatagttaatttatttacgtattctagctattctcatttttttattagcaaaaaaaaaaaactaatctcggtttattgccttcttcattctttttgatt |
7501147 |
T |
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| Q |
316 |
nnnnnnnaaataataaatttaggatacattatagaaagaacacttagga |
364 |
Q |
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| T |
7501148 |
tttttttaaataataaatttaggacacattatagaaagaacacttagga |
7501196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 384 - 448
Target Start/End: Original strand, 7509053 - 7509117
Alignment:
| Q |
384 |
ttccttttcctattcttcttcctttgcaatttactgatgtggaatttgtcaaactcttgctttgg |
448 |
Q |
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| T |
7509053 |
ttccttttcctattcttcttcctttgcaaattactgatttggaatttgtcaacctcttgctttgg |
7509117 |
T |
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