View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21079_low_5 (Length: 443)
Name: NF21079_low_5
Description: NF21079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21079_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 426
Target Start/End: Original strand, 35444908 - 35445320
Alignment:
| Q |
10 |
agcagagaagaagaactgatctagacacacacacagacatggcttcatcaagaggtggtagtaagatcaaagaattgagtgcagagagaattgataagtc |
109 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35444908 |
agcaaagaagaagaactga----gacacacacacagacatggcttcatcaagaggtggtagtaagatcaaagaattgagtgcagagagaattgataagtc |
35445003 |
T |
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| Q |
110 |
atttgctgcgtccttgaaggctcacaagacaccagagaaactctaccttatagaaaagaacaacaaaagcaatcctccagaagttatcatcagctttcca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35445004 |
atttgctgcgtccttgaaggctcacaagacaccagagaaactctaccttatagaaaagaacaacaaaagcaatcctccagaagttatcatcagctttcca |
35445103 |
T |
|
| Q |
210 |
gcatcaggtgttttcaatgattggtattccaaaacaacttttggtgaaactgaaatagatcttaaactatttcgttcacttaaaagcattggtaacaatg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35445104 |
gcatcaggtgttttcaatgattggtattccaaaacaacttttggtgaaactgaaatagatcttaaactatttcgttcacttaaaagcattggtaacaatg |
35445203 |
T |
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| Q |
310 |
aagctgctaaggttaatcaattttttcaccaaagattcaaagatattttggcaaagtcaacacttgaagaagaggtattatatatgtgaaaatacataca |
409 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35445204 |
aagctgctaaggttaatcaattttttctccaaagattcaaagatattttggcaaagtcaacacttgaagaagaggtattatatatgtgaaaatacacaca |
35445303 |
T |
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| Q |
410 |
tctctctatcttaccat |
426 |
Q |
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||||||||||||||||| |
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| T |
35445304 |
tctctctatcttaccat |
35445320 |
T |
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