View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21079_low_7 (Length: 307)
Name: NF21079_low_7
Description: NF21079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21079_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 21078310 - 21078609
Alignment:
| Q |
1 |
ataaggtttttccttccaacatgagatcgcaccgcgaaaagggtattgagtctccaaccacatccttcttccctgtctccttcttggagcaacagagtga |
100 |
Q |
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| T |
21078310 |
ataaggtttttccgtccaacatgagatcgcactgcgaaaagggtattgagtctccgaccacatccttcttccctgtctccttcttggagcaacagagtga |
21078409 |
T |
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| Q |
101 |
tatgtgtgatcttgatcagtttcaagtggatgatgcaccaccagttattaacttatccaaatattttcctccaagttcccataaaaagaaaaagcgcagc |
200 |
Q |
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| T |
21078410 |
tatgtgtgatcttgatcagtttcaagtggatgatgcaccaccagttattaacttatccaaatatttgcctccaagttcccataaaaagaaaaaacgcagc |
21078509 |
T |
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| Q |
201 |
atcgtgagaagaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtctcgtggtggtggtggtgatgatgacgatgatgatg |
300 |
Q |
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| T |
21078510 |
atcgtgagaagaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtctcgtggtggtggtggtgatgatgacgatgatgatg |
21078609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 3073780 - 3073724
Alignment:
| Q |
210 |
agaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtct |
266 |
Q |
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| T |
3073780 |
agaaatatcattgatcatgaacatcttaatggagcatatacactcttcgatatgtct |
3073724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 30618030 - 30617998
Alignment:
| Q |
268 |
gtggtggtggtggtgatgatgacgatgatgatg |
300 |
Q |
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| T |
30618030 |
gtggtggtggtggtgatgatgatgatgatgatg |
30617998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 27732144 - 27732088
Alignment:
| Q |
210 |
agaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtct |
266 |
Q |
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|||||||| ||||||||||||| |||||||| |||||| | |||||| |||||||| |
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| T |
27732144 |
agaaatatcattgatcatgaacatcttaatggagcacaaacactcttcaatatgtct |
27732088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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