View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21079_low_8 (Length: 300)
Name: NF21079_low_8
Description: NF21079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21079_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 29 - 300
Target Start/End: Complemental strand, 43601231 - 43600960
Alignment:
| Q |
29 |
gagaagaagaaagatacgcatatagttcatttcattttacattattacattctcatgaatgagatttgtaaaaataattaagaaagagcttttattgagt |
128 |
Q |
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| T |
43601231 |
gagaagaagaaagatacgcatatagttcatttcattttacattattacattctcatgaatgagatttgtaaatataattaagaaagtgcttttattaagt |
43601132 |
T |
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| Q |
129 |
aaagaaaaagtatcgtttcaaaacaataaaaatagagtaaattaaaatgtccctctctcctgccaataatctaacagtattttttccagaacaaatacca |
228 |
Q |
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| T |
43601131 |
aaagaaaaagtatcgtttcaaaacaataaaaatagagtaaattaaaatgtccctctctcctgccaataatctaacagtattttttccagaacaaatacca |
43601032 |
T |
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| Q |
229 |
aatatgagnnnnnnnatgttcctaccgataataacttcattagaacagttacatattgttttccataataat |
300 |
Q |
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| T |
43601031 |
aatatgagtttttttatgttcctaccgataataacttcattagaacagttacatattgttttcactaataat |
43600960 |
T |
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