View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2107_high_1 (Length: 504)
Name: NF2107_high_1
Description: NF2107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2107_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 39 - 302
Target Start/End: Original strand, 2963702 - 2963965
Alignment:
| Q |
39 |
cacctagagaaacaaatcttataaagggagaatggaccaagccaactccgcaaaagaaccaagacacataagatcacgaaacaaacttaagcactccgct |
138 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2963702 |
cacctagagaaacgaatcttataaagggagaatcgaccaagccaactccgcaaaagaaccaagacacataagatcacgaaacaaacttaagcactctgct |
2963801 |
T |
|
| Q |
139 |
cattggcacgcaaacaagacctcctccacacaaaaagctaccggcctcggaagagaagtggtttgcaccacccactcatagatatagacaaggtgaacga |
238 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2963802 |
cattggcacccaaacaagacctcctccacacaaaaagctaccggcctcggaagagaagtggtttgcaccacccactcatagatatagacaaggtgaacga |
2963901 |
T |
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| Q |
239 |
gatgtctcccaaaaaatcaaaaccacttagagaaacagatcttataaatcaattcttccacatc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2963902 |
gatgtctcccaaaaaatcaaaaccacttagagaaacagatcttataaatcaattcttccacatc |
2963965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 39 - 302
Target Start/End: Original strand, 2942881 - 2943142
Alignment:
| Q |
39 |
cacctagagaaacaaatcttataaagggagaatggaccaagccaactccgcaaaagaaccaagacacataagatcacgaaacaaacttaagcactccgct |
138 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
2942881 |
cacctagagaaacaaatcttataaagggagaatggaccaagccaactccaccaaagaaccaagacacataagatcaccaaacaaacccaagcactccgct |
2942980 |
T |
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| Q |
139 |
cattggcacgcaaacaagacctcctccacacaaaaagctaccggcctcggaagagaagtggtttgcaccacccactcatagatatagacaaggtgaacga |
238 |
Q |
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| T |
2942981 |
cattggcacccaaacaaga---cctccacacaaaaagctaccggccatggcagagaagtggtttacaccacccactcatagatattgacaaggtgaacga |
2943077 |
T |
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| Q |
239 |
-gatgtctcccaaaaaatcaaaaccacttagagaaacagatcttataaatcaattcttccacatc |
302 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||| |
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| T |
2943078 |
ggatgcctcccaaaaaatcaaaaccacttagggaaacagatcttataaaccaattcctccgcatc |
2943142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 367 - 486
Target Start/End: Original strand, 2964030 - 2964150
Alignment:
| Q |
367 |
gttgtacagatacaataataaaaaagtttgagattgcgaataaatatannnnnnn-aatcagtaaatttattaggcaaaaggaaaattatatatattata |
465 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2964030 |
gttgtaccgatacaataataaaaaagtttgagattgcgaataaatatattttttttaatcagtaaatttattaggcaaaaggaaaattatatatattata |
2964129 |
T |
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| Q |
466 |
atattcacaagacaccattag |
486 |
Q |
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||||||||||||||||||||| |
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| T |
2964130 |
atattcacaagacaccattag |
2964150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 2943204 - 2943312
Alignment:
| Q |
368 |
ttgtacagatacaataataaaaaagtttgagattgcgaataaatatannnnnnnaatcagtaaatttattaggcaaaaggaaaattatatata--ttata |
465 |
Q |
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|||||| ||||||||||||||| | |||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||| |
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| T |
2943204 |
ttgtaccgatacaataataaaagaagttgagattgcaaataaatat-tttttttaatcattaaatttattaggcaaaaggaaaactatatatatgttata |
2943302 |
T |
|
| Q |
466 |
atattcacaa |
475 |
Q |
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|||||||||| |
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|
| T |
2943303 |
atattcacaa |
2943312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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