View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2107_low_3 (Length: 440)
Name: NF2107_low_3
Description: NF2107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2107_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Original strand, 35046338 - 35046742
Alignment:
| Q |
17 |
ggatcttaaatcaacatggggaaccatataaataaatgtttggactctacatattttatatatgacctagcaaccatattaatagcaactatttaataaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35046338 |
ggatcttaaatcaacatggggaaccatataaataaatgtttggactctacatattttatatatgacctagcaaccatattaatagcaactatttaataaa |
35046437 |
T |
|
| Q |
117 |
tgttatagatacaacgtagcattagggaagaaagatagtaacttacatcatgacaatgaagagcaccaatatggctgaagagatggagtatgtatcaaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35046438 |
tgttatagatacaacgtagcattagggaagaaagatagtaacttacatcatgacaatgaagagcaccaatatggcagaagagatggagtatgtatcaaaa |
35046537 |
T |
|
| Q |
217 |
acagattcaccagaatgtctaacatttgtaacttgaaacaaagatgcaactaatttctgatagatatttagtccctccataatcttagaactccactcca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35046538 |
acagattcaccagaatgtctaacatttgtaacttgaaacaaagatgcaactaatttctgatagatatttagtccctccataatcttagaactccactcca |
35046637 |
T |
|
| Q |
317 |
tacaacagaacaatataaattgtatcacattgaaaccaaagacagtgccaacaaggtgccaacaatgaagagtagagagcaaatgatcataacccatttc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35046638 |
tacaacagaacaatataaattgtatcacattgaaaccaaagacagtgccaacaaggtgccaacaatgaagagtagagagcaaatgatcataacccatttc |
35046737 |
T |
|
| Q |
417 |
ctttg |
421 |
Q |
| |
|
||||| |
|
|
| T |
35046738 |
ctttg |
35046742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 180 - 421
Target Start/End: Original strand, 35000140 - 35000381
Alignment:
| Q |
180 |
caccaatatggctgaagagatggagtatgtatcaaaaacagattcaccagaatgtctaacatttgtaacttgaaacaaagatgcaactaatttctgatag |
279 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| | ||||| ||| |
|
|
| T |
35000140 |
caccaatatggctgaggagatggtagagagatcaaaaacagattcaccagaatgtctagcatttgaaacttgaaacaaagttgcaaccactttctcatat |
35000239 |
T |
|
| Q |
280 |
atatttagtccctccataatcttagaactccactccatacaacagaacaatataaattgtatcacattgaaaccaaagacagtgccaacaaggtgccaac |
379 |
Q |
| |
|
| ||| || |||||||||| || |||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||| |||| |||||| |
|
|
| T |
35000240 |
agattaagatcctccataatattggaactccattccatggaacaaaacaatacaaattgtatcacattgaaaccaaagacagtgacaagaaggagccaac |
35000339 |
T |
|
| Q |
380 |
aatgaagagtagagagcaaatgatcataacccatttcctttg |
421 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
35000340 |
aatgaagagaagagagcaaatggtcataacccatttcctttg |
35000381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University