View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2107_low_4 (Length: 399)
Name: NF2107_low_4
Description: NF2107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2107_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 4195511 - 4195893
Alignment:
| Q |
17 |
acttttgatgatacataatgaattctctggcgagattcctgggagtttaggggagtgtcggacattgacgcgcgttaggttaggttttaataagttgtca |
116 |
Q |
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| T |
4195511 |
acttttgatgatacataatgaattctctggcgagattccagggagtttaggggagtgtcggacattgacgcgcgttaggttgggttttaataagttgtca |
4195610 |
T |
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| Q |
117 |
ggtgaagttccggcgggtttttggggtctgccgcatgtttatcttcttgagcttgttgataacttgttttctggttcaattggtaagactattggtggag |
216 |
Q |
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| T |
4195611 |
ggtgaagttccggcgggtttttggggtctgccgcatgtttatcttcttgagcttgttgataacttgttttctggttcaattggtaagactattggtggag |
4195710 |
T |
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| Q |
217 |
ctgggaatttgtctcagttgactttgacgaataataatttctctggtgtgattcctgaagagattggattgttggaaaatcttcaggaattttcgggtgg |
316 |
Q |
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| T |
4195711 |
ctgggaatttgtctcagttgactttgacgaataataatttctctggtgtgattcctgaagagattggattgttggaaaatcttcaggaattttcgggtgg |
4195810 |
T |
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| Q |
317 |
taataaccggttcaattcttcattgcccgagagtattgtgaatcttcatcagcttgggattcttgatcttcacaagaataatc |
399 |
Q |
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| T |
4195811 |
taataaccggtttaattcttcattgcccgagagtattgtgaatcttcatcagcttgggattcttgatcttcacaagaataatc |
4195893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 34923831 - 34923689
Alignment:
| Q |
81 |
ttgacgcgcgttaggttaggttttaataagttgtcaggtgaagttccggcgggtttttggggtctgccgcatgtttatcttcttgagcttgttgataact |
180 |
Q |
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| T |
34923831 |
ttgacgcgtgtgagattgggttttaatcggttttccggtgaggttccggcgggtatctggggtcttcctcatgtgtatcttcttgagcttgctcataact |
34923732 |
T |
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| Q |
181 |
tgttttctggttcaattggtaagactattggtggagctgggaa |
223 |
Q |
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| T |
34923731 |
cgttttcgggttctatttcgaagactattgctggagcagggaa |
34923689 |
T |
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