View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2107_low_5 (Length: 353)
Name: NF2107_low_5
Description: NF2107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2107_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 1669305 - 1669623
Alignment:
| Q |
18 |
ggtgcgaaaaagattggaagaaactgaagttacttgaaacaaataagaattcatcgaaaaaatatcagtctacaagtcatagggttatgtgatcttcatg |
117 |
Q |
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| T |
1669305 |
ggtgtgaaaaagattggaagaaactgaagttacttgaaacaaataagaattcatcgaaaaaatatcagtctacaagtcatagggttatgtgatcttcatg |
1669404 |
T |
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| Q |
118 |
gtacatatgtattacctctagagtttctccataaacaggtgccttttctccctctaccataatttctaaaggtatagtccttgttttctctgtacttgga |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1669405 |
gtatatatgtattacctctagagtttctccataaacaggtgccttttctccctctaccataatttctaaaggtatagtccttgttttctctgtacttgga |
1669504 |
T |
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| Q |
218 |
tcaataaaaccctcggcagggccttcagggtcaccagtttggacaacaaacccatccgctgcacaaaagtaaatggaaacaaaacaaaactatattggtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1669505 |
tcaataaaaccctcggcagggccttcagggtcaccagtttggacaacaaacccatccgctgcacaaaagtaaatggaaacaaaacaaaactatactggtg |
1669604 |
T |
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| Q |
318 |
aaaatgtatataactagag |
336 |
Q |
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||||||||||||||||||| |
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| T |
1669605 |
aaaatgtatataactagag |
1669623 |
T |
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