View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2107_low_6 (Length: 327)
Name: NF2107_low_6
Description: NF2107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2107_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 3 - 311
Target Start/End: Original strand, 44142279 - 44142587
Alignment:
| Q |
3 |
aggagaaaaaggtaggaaatggggtgaattatgtctccctgagggatcactggtgaatgaactgtgaagaattaaacaaaaatagccaaaggcatggctc |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142279 |
aggagaaaaaggtaggaaatggggtgaattatgtctccctgagggatcagtggtgagtgaactgtgaagaattaaacaaaaatagccaaaggcatggctc |
44142378 |
T |
|
| Q |
103 |
agagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaactatgttcagagtaaatgaaatttgcacccagaaaacaaagtggagcta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142379 |
agagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaaccatgttcagagtaaatgaaatttgcacccagaaaacaaagtggagcta |
44142478 |
T |
|
| Q |
203 |
tgtaaattctttacagccctaataaaaccataaatccaagttctaaaataattttgactcccaaaattgaaaccaaacatatgtttattcatactaactt |
302 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142479 |
tgtaaattctttatagccctaataaaaccataaatccaagttctaaaataattttgactcccaaaattgaaaccaaacatatgtttattcatactaactt |
44142578 |
T |
|
| Q |
303 |
atacattac |
311 |
Q |
| |
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||||||||| |
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| T |
44142579 |
atacattac |
44142587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 44121691 - 44121733
Alignment:
| Q |
263 |
ccaaaattgaaaccaaacatatgtttattcatactaacttata |
305 |
Q |
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|||||||| |||||||||||||| |||||||| |||||||||| |
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| T |
44121691 |
ccaaaattaaaaccaaacatatgcttattcatgctaacttata |
44121733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 3 - 311
Target Start/End: Original strand, 50062931 - 50063250
Alignment:
| Q |
3 |
aggagaaaaaggtaggaaatggggtgaattatg-----------tctccctgagggatcactggtgaatgaactgtgaagaattaaacaaaaatagccaa |
91 |
Q |
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||||||||||||| ||||||||||||||||||| || ||||||||||||| |||||| |||||| ||||||||||||||||||||||||| |
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| T |
50062931 |
aggagaaaaaggttggaaatggggtgaattatgaagtgtggacgtcaccctgagggatcagtggtgagtgaactatgaagaattaaacaaaaatagccaa |
50063030 |
T |
|
| Q |
92 |
aggcatggctcagagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaactatgttcagagtaaatgaaatttgcacccagaaaaca |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50063031 |
aggcatggctcagagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaactatgttcagagtaaatgaaatttgcacccagaaaaca |
50063130 |
T |
|
| Q |
192 |
aagtggagctatgtaaattctttacagccctaataaaaccataaatccaagttctaaaataattttgactcccaaaattgaaaccaaacatatgtttatt |
291 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
50063131 |
aagtggagctatggaaattctttacagccctaataaaaccataaatccaagttctaaaataattttgactcccaaaattgaaaccaaacataggcttatt |
50063230 |
T |
|
| Q |
292 |
catactaacttatacattac |
311 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
50063231 |
catactaacttatacattac |
50063250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 50024351 - 50024393
Alignment:
| Q |
263 |
ccaaaattgaaaccaaacatatgtttattcatactaacttata |
305 |
Q |
| |
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|||||||| |||||||||||||| |||||||| |||||||||| |
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|
| T |
50024351 |
ccaaaattaaaaccaaacatatgcttattcatgctaacttata |
50024393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 50031469 - 50031511
Alignment:
| Q |
263 |
ccaaaattgaaaccaaacatatgtttattcatactaacttata |
305 |
Q |
| |
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|||||||| |||||||||||||| |||||||| |||||||||| |
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| T |
50031469 |
ccaaaattaaaaccaaacatatgcttattcatgctaacttata |
50031511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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