View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2107_low_7 (Length: 306)

Name: NF2107_low_7
Description: NF2107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2107_low_7
NF2107_low_7
[»] chr2 (3 HSPs)
chr2 (19-95)||(44993493-44993569)
chr2 (224-295)||(44993308-44993379)
chr2 (58-95)||(44981669-44981706)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 44993569 - 44993493
Alignment:
Q  19 gggatgcattccatgcacaatttcagcagaatgaatttccactcttgtgctttcaacaactcttaacaaacacttgc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44993569 gggatgcattccatgcacaatttcagcagaatgaatttccactcttgtgctttcaacaactcttaacaaacacttgc 44993493  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 44993379 - 44993308
Alignment:
Q  224 ttaaagaaaaagtgagactgttgtcttaagttaatctgttcctgattcttatccttcaaatttttagcctat 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44993379 ttaaagaaaaagtgagactgttgtcttaagttaatctgttcctgattcttatccttcaaattttttgcctat 44993308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 44981706 - 44981669
Alignment:
Q  58 cactcttgtgctttcaacaactcttaacaaacacttgc 95  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  44981706 cactcttatgctttcaacaattcttaacaaacacttgc 44981669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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