View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2107_low_8 (Length: 299)
Name: NF2107_low_8
Description: NF2107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2107_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 2 - 280
Target Start/End: Original strand, 1702414 - 1702693
Alignment:
| Q |
2 |
tctacacaacatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagacacgtcacctttcatgagtcactctttcaatttt-at |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
1702414 |
tctacacaacatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagacacgtcacctttcatgagtcactctttccatttttat |
1702513 |
T |
|
| Q |
101 |
tgaatctttatgcctcgtccacgtcttctattttaaattcaaactcaaacactaacaagcactttccttctcatcatcctcttattattcaacaccttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1702514 |
tgaatctttatgcctcgtccacgtcttctattttaaattcaaactcaaacactagcaaacactttccttctcatcatcctcttattattcaacaccttaa |
1702613 |
T |
|
| Q |
201 |
ccatcctattattccttcaccttctcctcaaaattcaaactcatcacttatccctacacttcttatctccctcactacac |
280 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
1702614 |
ccatcctattattcctccaccttctcctcaaaattcaaactcatcacttatccctacacctcttatctcccccactacac |
1702693 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 26592018 - 26591960
Alignment:
| Q |
8 |
caacatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagaca |
66 |
Q |
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|||||||||||||||||||| || || || ||||||||||| || |||||||| ||||| |
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| T |
26592018 |
caacatcatgcctaccaatgctaccatcctcccactcaaaaattatatctctccagaca |
26591960 |
T |
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