View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21080_high_10 (Length: 452)
Name: NF21080_high_10
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Original strand, 35364647 - 35365068
Alignment:
| Q |
16 |
acaaatcctgttcaccaataattcgttgtaagttagaaaataattacgaaaccctttaattcgacacaaaaattccattgatttaaatttttgaaaaaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35364647 |
acaaatcctgttcaccaataattcgttgtaagttagaaaataattatgaaaccctttaattccacacaaaaattccgttgatttaaatttttgaaaaaga |
35364746 |
T |
|
| Q |
116 |
aaaatttagagtaagagaatgatatttcaatccaaagtagagaaaaccttaaatgactannnnnnnnnnnnnaattagttacaattatataaaagaaata |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35364747 |
aaaatttagagtaatagaatgatatttcaatccaaagtagagaaaaccttaaatgactatttttttt-----aattagttacaattatataaaagaaata |
35364841 |
T |
|
| Q |
216 |
aatcagaaagtgatgaaatagtttttctaaataattttcatttatgcnnnnnnnaagcttaagtagtacctcagtaaattgaaatttaatttcttactgc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35364842 |
aatcagaaagtgatgaaatagtttttctaaataattttcatttatgctttttttaagcttaagtagtacctcagtaaattgaaatttaatttcttactgc |
35364941 |
T |
|
| Q |
316 |
aaaattaatagaaaagattgatacattgaggtttagtgcacataccaaaagcttgagggttgttaacaaaatccatgaacagtttgtgtgcagtaatagc |
415 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35364942 |
aaaattaatagaaa-gattgatacatagaggtttagtgcacataccaaaagcttgagggttgttaacaaaatccatgaacagtttatgtgcagtaatagc |
35365040 |
T |
|
| Q |
416 |
aatgaagacatcagcaccaatctctgtg |
443 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
35365041 |
aatgaagacatcagcaccaatctctgtg |
35365068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 340 - 443
Target Start/End: Original strand, 35376509 - 35376612
Alignment:
| Q |
340 |
attgaggtttagtgcacataccaaaagcttgagggttgttaacaaaatccatgaacagtttgtgtgcagtaatagcaatgaagacatcagcaccaatctc |
439 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||| |||||||||| || || ||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
35376509 |
attgaagtttagtgcacataccaaaagcttgagggttggtaataaaatccatgtgcatttgacgtgcattagcagcaatgaagacatcagaaccaatctc |
35376608 |
T |
|
| Q |
440 |
tgtg |
443 |
Q |
| |
|
|||| |
|
|
| T |
35376609 |
tgtg |
35376612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 440
Target Start/End: Original strand, 35357942 - 35358031
Alignment:
| Q |
351 |
gtgcacataccaaaagcttgagggttgttaacaaaatccatgaacagtttgtgtgcagtaatagcaatgaagacatcagcaccaatctct |
440 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| |||||||||| || ||| |||||| ||| |||||||||||||||| ||||||||||| |
|
|
| T |
35357942 |
gtgcacataccaaaagctttagggttggtaataaaatccatgtgcattttatgtgcattaacagcaatgaagacatcatcaccaatctct |
35358031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University