View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21080_high_11 (Length: 444)
Name: NF21080_high_11
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Original strand, 43473825 - 43474246
Alignment:
| Q |
13 |
aatatcattctcatctgtgccccgcgtccttcactttcaaataaattaagtgaattcaatggttggttgtaggaaaaatgaagttgagaggaagaatatc |
112 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43473825 |
aatattattctcatctgtgccccgcgtccttcactttcaaataaattaagtgaattcaatggttggtagtaggaaaaatgaagttgagaggaagaatatc |
43473924 |
T |
|
| Q |
113 |
tgccctaatctccaactccaggtagatgaatacagaatgaagttacatgatttctctcttgaagagcaagagaaacaaaccgttttcaacttcatcccct |
212 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
43473925 |
tgccctaatctccaactccagatagatgaatatagaatgaagttacatgatttctctcttgaagaagaagagaaacaaaccgttttcaacttcatcgcct |
43474024 |
T |
|
| Q |
213 |
tagactacaaaaataggcgtattcggagtcatggatttgcatggaattctagtcaaaagcctcggcgccgttccataacatacttgtctctttactcttt |
312 |
Q |
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| T |
43474025 |
tagactacaaaaataggcgtattcggagtcatggatttgcatggaattctagtcaaaagcgtctgcgccgttccatagcatacttgtctctttactcttt |
43474124 |
T |
|
| Q |
313 |
gctcgaccttttacgtctacagaatcccgtctctattcacaatgattgtctactacgctttgatttttggattgcaaaactcaaaggctattttaaggga |
412 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43474125 |
gctcgaccttttacgtcgacagaatcccgtctctattcacaatgattgtctactacgctttgatttttggattgcaaaactcaaaggctattttaaggga |
43474224 |
T |
|
| Q |
413 |
gaatggttggacaaattggtag |
434 |
Q |
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| T |
43474225 |
gaatggttggacaaattggtag |
43474246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 35 - 420
Target Start/End: Complemental strand, 43566400 - 43566015
Alignment:
| Q |
35 |
cgcgtccttcactttcaaataaattaagtgaattcaatggttggttgtaggaaaaatgaagttgagaggaagaatatctgccctaatctccaactccagg |
134 |
Q |
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| T |
43566400 |
cgcgcccttcactttcaaacaaactcaatgaattcaatggttgatggtaagaagaataaagttgaggggaagaatatctgccccaatctccaatgtcaga |
43566301 |
T |
|
| Q |
135 |
tagatgaatacagaatgaagttacatgatttctctcttgaagagcaagagaaacaaaccgttttcaacttcatccccttagactacaaaaataggcgtat |
234 |
Q |
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| T |
43566300 |
tagatgaatacagaatgaagttaaatgatttctcccttgaagaacaagagaaacaaaccgtttccaaattcatcgccttagactacaaaaataggcgtat |
43566201 |
T |
|
| Q |
235 |
tcggagtcatggatttgcatggaattctagtcaaaagcctcggcgccgttccataacatacttgtctctttactctttgctcgaccttttacgtctacag |
334 |
Q |
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| T |
43566200 |
ttggaatagtggatttgcatggaattctggtcgaaagcatcggcgccgttccatagcatacttgtctctttactctttgcttgaccttttacgtcaagag |
43566101 |
T |
|
| Q |
335 |
aatcccgtctctattcacaatgattgtctactacgctttgatttttggattgcaaaactcaaaggctattttaagggagaatggtt |
420 |
Q |
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| T |
43566100 |
aatcccgtctctatccacaatgaatgtctgctatgctttgatttttggattgcaaaactcaaaggctattgtaagggagaatggtt |
43566015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 154 - 420
Target Start/End: Complemental strand, 43573129 - 43572857
Alignment:
| Q |
154 |
gttacatgatttctctcttgaagagcaagagaaacaaaccgttttcaacttcatccccttagactacaaaaataggcgtattcg---gagtcatgga--- |
247 |
Q |
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|||||||||||| || |||||||| ||| |||| | || |||| |||||||||| | | ||||| |||||||| |||||||| |||| ||||| |
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| T |
43573129 |
gttacatgatttatcacttgaagaagaagtgaaaaagactgtttccaacttcatctctatcgactataaaaatagacgtattcgcaagagtaatggaata |
43573030 |
T |
|
| Q |
248 |
tttgcatggaattctagtcaaaagcctcggcgccgttccataacatacttgtctctttactctttgctcgaccttttacgtctacagaatcccgtctcta |
347 |
Q |
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||||||| ||| ||||| ||| | || ||| |||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
43573029 |
tttgcattcaatattagtcgaaaccgtcagcgtcgttccatggcatactcgtctctttactctttgctcagccttttacgtcgacagaatcccgtctcta |
43572930 |
T |
|
| Q |
348 |
ttcacaatgattgtctactacgctttgatttttggattgcaaaactcaaaggctattttaagggagaatggtt |
420 |
Q |
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| | |||||| ||||| ||| |||||||| | |||| |||||||||||||||||||| |||||||||||| |
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| T |
43572929 |
tccccaatgaatgtctggaacgttttgatttctatattggaaaactcaaaggctattttatgggagaatggtt |
43572857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 43562311 - 43562258
Alignment:
| Q |
261 |
ctagtcaaaagcctcggcgccgttccataacatacttgtctctttactctttgc |
314 |
Q |
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|||||||||||| ||| |||| ||||||| |||||||||||||||||||||||| |
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| T |
43562311 |
ctagtcaaaagcatcgacgccattccatagcatacttgtctctttactctttgc |
43562258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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