View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21080_high_17 (Length: 315)
Name: NF21080_high_17
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_high_17 |
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| [»] scaffold0031 (2 HSPs) |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 47649660 - 47649835
Alignment:
| Q |
16 |
aacctgtgacagactttccctttaggggtttaattccagctcctaagccacgacaatatcccgatcgctctcccacaactgattcaaaagcaatattcac |
115 |
Q |
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| T |
47649660 |
aacctgtgacagactttccctttaggggtttaattccagctcctaagccacgacaatatcccaatcgccctcccacaactgattcaaaagcaatattcgc |
47649759 |
T |
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| Q |
116 |
aatcacatctttatcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttcatctattta |
191 |
Q |
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| T |
47649760 |
aatgacatctttatcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttcgtctattta |
47649835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 47649940 - 47650047
Alignment:
| Q |
187 |
atttatccattcgccattgctgtttgtgtgagtcattctccataaatcctcatagttgggctccttttcggtttcaggatctctctaaaagcaaattttc |
286 |
Q |
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| T |
47649940 |
atttatccat-ctccattgctgtttgtgcgagtcattctccataaatccttatagttgggctcctttttggtttcaggatctctctaaaagcaaattttc |
47650038 |
T |
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| Q |
287 |
atcatcaca |
295 |
Q |
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||||||||| |
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| T |
47650039 |
atcatcaca |
47650047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 31 - 191
Target Start/End: Original strand, 91833 - 91993
Alignment:
| Q |
31 |
ttccctttaggggtttaattccagctcctaagccacgacaatatcccgatcgctctcccacaactgattcaaaagcaatattcacaatcacatctttatc |
130 |
Q |
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| T |
91833 |
ttccctttagggttttaattccagctcccaagccacgacaatatcccgatcgctctcccacaactgatttaaaagcaatattcataattaaatctttatc |
91932 |
T |
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| Q |
131 |
agtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttcatctattta |
191 |
Q |
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| T |
91933 |
agtgttcccatatccagcttctaggtgatatgaagaagcttcttcaaccctcatctattta |
91993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 92098 - 92206
Alignment:
| Q |
187 |
atttatccattcgccattgctgtttgtgtgagtcattctccataaatcctcatagttgggctccttttcggtttcaggatctctctaaaagcaaattttc |
286 |
Q |
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| T |
92098 |
atttatccattctccgttgttgtttatgtgagtcattctccataaatccttatagttgtgctccttttcagtttcaagatctctctaaaagcaaattttc |
92197 |
T |
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| Q |
287 |
atcatcaca |
295 |
Q |
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||| ||||| |
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| T |
92198 |
atcgtcaca |
92206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 187 - 291
Target Start/End: Complemental strand, 170884 - 170780
Alignment:
| Q |
187 |
atttatccattcgccattgctgtttgtgtgagtcattctccataaatcctcatagttgggctccttttcggtttcaggatctctctaaaagcaaattttc |
286 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||| |||||||||||||||||||||||| |
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| T |
170884 |
atttatccattctccattgctgtttgtgtgagtcattctccataaatccttatagttagcctcctttttggtttcgggatctctctaaaagcaaattttc |
170785 |
T |
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| Q |
287 |
atcat |
291 |
Q |
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||||| |
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| T |
170784 |
atcat |
170780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 171049 - 170993
Alignment:
| Q |
128 |
atcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttcat |
184 |
Q |
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| T |
171049 |
atcagtgtcctcatatccagcttgtaagaaaactgaagaagtttcttcaaccttcat |
170993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 30753873 - 30753951
Alignment:
| Q |
101 |
aaaagcaatattcacaatcacatctttatcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaacc |
179 |
Q |
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| T |
30753873 |
aaaagcaatattcgtaatcacatctttatcggtgtccccatatctagtttctgagtaatcagaagaagcttcttcaacc |
30753951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 30754130 - 30754182
Alignment:
| Q |
245 |
ggctccttttcggtttcaggatctc--tctaaaagcaaattttcatcatcaca |
295 |
Q |
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||||||||||| |||||| |||||| |||||||||| ||||||||||||||| |
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| T |
30754130 |
ggctccttttcagtttcacgatctctctctaaaagcatattttcatcatcaca |
30754182 |
T |
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