View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21080_high_19 (Length: 241)
Name: NF21080_high_19
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_high_19 |
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| [»] scaffold0031 (2 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0031 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 92066 - 92171
Alignment:
| Q |
136 |
ggatgtcatacatgaacattcttagaagcatcatttatccattctccgttgttgtttgtgtgagtcattttccataaatccttatagttgggctcctttt |
235 |
Q |
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| T |
92066 |
ggatgtcatacatgaatattcttagaagcatcatttatccattctccgttgttgtttatgtgagtcattctccataaatccttatagttgtgctcctttt |
92165 |
T |
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| Q |
236 |
cggttt |
241 |
Q |
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| |||| |
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| T |
92166 |
cagttt |
92171 |
T |
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Target: scaffold0031; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 91930 - 91990
Alignment:
| Q |
1 |
atcagtgtccccatatccagcttctaggtgatatgaagaagcttcctcaa-cctcatctat |
60 |
Q |
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| T |
91930 |
atcagtgttcccatatccagcttctaggtgatatgaagaagcttcttcaaccctcatctat |
91990 |
T |
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Target: scaffold0009 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 170916 - 170811
Alignment:
| Q |
136 |
ggatgtcatacatgaacattcttagaagcatcatttatccattctccgttgttgtttgtgtgagtcattttccataaatccttatagttgggctcctttt |
235 |
Q |
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||||| ||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| | |||||||| |
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| T |
170916 |
ggatgccatacatgaacttccttagaagcatcatttatccattctccattgctgtttgtgtgagtcattctccataaatccttatagttagcctcctttt |
170817 |
T |
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| Q |
236 |
cggttt |
241 |
Q |
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| T |
170816 |
tggttt |
170811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 47649908 - 47650012
Alignment:
| Q |
136 |
ggatgtcatacatgaacattcttagaagcatcatttatccattctccgttgttgtttgtgtgagtcattttccataaatccttatagttgggctcctttt |
235 |
Q |
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||||||||||||||||| | |||||||||||||||||||||| |||| ||| |||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
47649908 |
ggatgtcatacatgaacttccttagaagcatcatttatccat-ctccattgctgtttgtgcgagtcattctccataaatccttatagttgggctcctttt |
47650006 |
T |
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| Q |
236 |
cggttt |
241 |
Q |
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||||| |
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| T |
47650007 |
tggttt |
47650012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 30754076 - 30754121
Alignment:
| Q |
137 |
gatgtcatacatgaacattcttagaagcatcatttatccattctcc |
182 |
Q |
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|||||||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
30754076 |
gatgtcatacatgaacttccttagaagcgtcatttatccattctcc |
30754121 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 37332670 - 37332722
Alignment:
| Q |
161 |
aagcatcatttatccattctccgttgttgtttgtgtgagtcattttccataaat |
214 |
Q |
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|||||||||||||||| ||||| |||| ||||||||||||||| ||||||||| |
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| T |
37332670 |
aagcatcatttatccactctcccttgta-tttgtgtgagtcattctccataaat |
37332722 |
T |
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