View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21080_high_2 (Length: 660)

Name: NF21080_high_2
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21080_high_2
NF21080_high_2
[»] scaffold0154 (2 HSPs)
scaffold0154 (273-641)||(10226-10592)
scaffold0154 (193-249)||(10620-10676)
[»] chr1 (3 HSPs)
chr1 (403-641)||(52166224-52166466)
chr1 (148-193)||(15911226-15911271)
chr1 (148-185)||(15910531-15910568)
[»] chr4 (7 HSPs)
chr4 (14-192)||(39096593-39096767)
chr4 (102-185)||(39095887-39095970)
chr4 (102-194)||(23176331-23176421)
chr4 (308-400)||(40270201-40270293)
chr4 (308-400)||(42573188-42573280)
chr4 (354-400)||(40270337-40270383)
chr4 (373-437)||(55207307-55207371)
[»] chr7 (4 HSPs)
chr7 (293-360)||(6641431-6641498)
chr7 (101-192)||(35105616-35105707)
chr7 (326-400)||(6638069-6638143)
chr7 (340-379)||(6641363-6641402)
[»] chr6 (2 HSPs)
chr6 (534-599)||(950342-950406)
chr6 (459-535)||(947103-947179)
[»] chr2 (3 HSPs)
chr2 (120-192)||(39439657-39439730)
chr2 (120-192)||(19814986-19815059)
chr2 (403-453)||(41782513-41782563)
[»] scaffold0122 (1 HSPs)
scaffold0122 (120-192)||(31304-31377)
[»] chr5 (5 HSPs)
chr5 (120-192)||(14188483-14188556)
chr5 (148-191)||(10569927-10569970)
chr5 (478-524)||(14760072-14760118)
chr5 (536-593)||(14767512-14767568)
chr5 (149-185)||(10570974-10571010)


Alignment Details
Target: scaffold0154 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 273 - 641
Target Start/End: Complemental strand, 10592 - 10226
Alignment:
Q  273 atcaactcattgaaagcaggtcacgcacaatctccaaacctgttgctgagaacgactctgcaaatacaaaaatctgtttaataacaacgccgtgatttcg 372  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||  ||    
T  10592 atcaactcattgaaagcag-tcacgcacgatctccaaacctgttgctgagaacgactctgcaaatacaaaaatctgtttaataacaacgccacaataccg 10494  T
Q  373 acaattcgttcaaaattgtacgacttcataagcaagaggctgagggcggggatttctttttctctcaaatcgaagaaaaaagagcaatttgtgtaggtga 472  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10493 acaattcgttcaaaattgtacgacttcagaagcaagaggctgagggcggggatttctttttctctcaaatcgaagaaaaaagagcaatttgtgtaggtga 10394  T
Q  473 agatagggttaacattcacaaagttgttcagtaggttattcgtgaacaaggagatgataatttagagatgttgtgttgcttgtttttgccaacaaacaaa 572  Q
    ||||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10393 agatagggtcaacgttcacaaagctgttca-taggttattcgtgaacaaggagatgataatttatagatgttgtgttgcttgtttttgccaacaaacaaa 10295  T
Q  573 gatctttcaaatgcaatgaatactgcataacttgttcttgaagaacgatggtgttcctttcaagtgaat 641  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  10294 gatctttcaaatggaatgaatactgcataacttgttcttgaagaacgatggtggtcctttaaagtgaat 10226  T

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Target: scaffold0154; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 10676 - 10620
Alignment:
Q  193 ttttcacatacttgtttttctcgtgaaattactttcactatattgagcattatccat 249  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  10676 ttttcacattcttgtttttctcgtgaaattactttcgctatattgagcattatccat 10620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 403 - 641
Target Start/End: Complemental strand, 52166466 - 52166224
Alignment:
Q  403 agcaagaggctgagggcggggatttctttttctctcaaatcgaagaaaaaa-gagcaatttgtgtaggtgaagatagggttaacattcacaaagttgttc 501  Q
    ||||||||||||||||  ||||||||||| |||||||||||||| |||||| ||||||||||| |||||| ||||| ||||||| ||||| ||| |||||    
T  52166466 agcaagaggctgagggaagggatttctttctctctcaaatcgaataaaaaaagagcaatttgtctaggtgtagataaggttaacgttcacgaagctgttc 52166367  T
Q  502 agtaggttattcgtgaacaaggagatgataatttagagatgttgtgttgcttgtttttgccaacaaacaaagatctttcaaatgcaatgaat-------a 594  Q
    ||   |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||||||||            
T  52166366 ag---gttattcgtgaagaaggagatgataatttagagatgttgtgttgctagtttttgctaacaaac-aagatcttccaaatgcaatgaatgctgcagc 52166271  T
Q  595 ctgcataacttgttcttgaagaacgatggtgttcctttcaagtgaat 641  Q
    ||||| |||| |||||||||||| |||| ||||| ||||||||||||    
T  52166270 ctgcagaactcgttcttgaagaaggatgatgttcttttcaagtgaat 52166224  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 15911226 - 15911271
Alignment:
Q  148 gaaggagagagaaggagacaattttgaaggagatgatcaaattcct 193  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||    
T  15911226 gaaggagagagaaggagacaattttgaaggagaggatccaattcct 15911271  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 15910568 - 15910531
Alignment:
Q  148 gaaggagagagaaggagacaattttgaaggagatgatc 185  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  15910568 gaaggagagagaatgagacaattttgaaggagaggatc 15910531  T

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Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 39096593 - 39096767
Alignment:
Q  14 caaagggaagatgaagaagttcctgcagtagtaaaaccctcccagtttgtgatgttttaggttgtttatttatgnnnnnnnnnnataattttaatatgtc 113  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||           |||||||||||||||    
T  39096593 caaagggaagatgaagaagtttctgcagtagtaaaaccctccgagtttgtgatgttttaggttgtttatt-atgtttttttt---taattttaatatgtc 39096688  T
Q  114 taccgttagattcatctaatggctaatagtaagagaaggagagagaaggagacaattttgaaggagatgatcaaattcc 192  Q
    ||| |||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  39096689 tacagttagattcatctaatggctaatattaaaggaaggagagagaaggagacaattttgaaggagatgatccaattcc 39096767  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 39095970 - 39095887
Alignment:
Q  102 ttttaatatgtctaccgttagattcatctaatggctaatagtaagagaaggagagagaaggagacaattttgaaggagatgatc 185  Q
    ||||| |||||| |||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  39095970 ttttattatgtccaccgttggattcatctaatggataatattaagggaaggagagagaaggagacaattttgaaggagaggatc 39095887  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 23176421 - 23176331
Alignment:
Q  102 ttttaatatgtctaccgttagattcatctaatggctaatagtaagagaaggagagagaaggagacaattttgaaggagatgatcaaattcctt 194  Q
    ||||| |||||| ||||||||||||||||||||| ||||| |||||  ||||||||||||||||||||||||||||||| ||||  |||||||    
T  23176421 ttttattatgtccaccgttagattcatctaatggataatattaaga--aggagagagaaggagacaattttgaaggagaggatctgattcctt 23176331  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 40270201 - 40270293
Alignment:
Q  308 aaacctgttgctgagaacgactctgcaaatacaaaaatctgtttaataacaacgccgtgatttcgacaattcgttcaaaattgtacgacttca 400  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||  |||||| ||||||| ||||||  ||||||||||||    
T  40270201 aaacatgttgctgagaacgactctgcaaatacaaaaatttgtttaataaaaacaccacgatttctacaattccttcaaagatgtacgacttca 40270293  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 42573188 - 42573280
Alignment:
Q  308 aaacctgttgctgagaacgactctgcaaatacaaaaatctgtttaataacaacgccgtgatttcgacaattcgttcaaaattgtacgacttca 400  Q
    |||| ||||| ||||| ||||||||||||||||||||| |||||||||| ||| | | |||||||||||||| ||||||  ||||||||||||    
T  42573188 aaacatgttgatgagagcgactctgcaaatacaaaaatatgtttaataaaaacactgcgatttcgacaattccttcaaagatgtacgacttca 42573280  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 40270337 - 40270383
Alignment:
Q  354 taacaacgccgtgatttcgacaattcgttcaaaattgtacgacttca 400  Q
    ||||||||||| ||||||||||| ||||||||| |||||| ||||||    
T  40270337 taacaacgccgcgatttcgacaactcgttcaaagttgtacaacttca 40270383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 55207307 - 55207371
Alignment:
Q  373 acaattcgttcaaaattgtacgacttcataagcaagaggctgagggcggggatttctttttctct 437  Q
    |||||||||| ||  || ||||||||||  | ||||||| ||||||||| |||||||||||||||    
T  55207307 acaattcgtttaaccttttacgacttcaacaacaagaggatgagggcggtgatttctttttctct 55207371  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 6641498 - 6641431
Alignment:
Q  293 tcacgcacaatctccaaacctgttgctgagaacgactctgcaaatacaaaaatctgtttaataacaac 360  Q
    |||| ||| |||| ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  6641498 tcacacaccatcttcaaacctgttgctgagaacaactctgcaactacaaaaatatgtttaataacaac 6641431  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 35105707 - 35105616
Alignment:
Q  101 attttaatatgtctaccgttagattcatctaatggctaatagtaagagaaggagagagaaggagacaattttgaaggagatgatcaaattcc 192  Q
    ||||||||||||| ||||||||||| ||||||||| ||| | |    |||||||||||||||||||| |||| ||||||| |||| ||||||    
T  35105707 attttaatatgtccaccgttagattgatctaatggttaagatttgaggaaggagagagaaggagacagttttaaaggagaggatccaattcc 35105616  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 326 - 400
Target Start/End: Complemental strand, 6638143 - 6638069
Alignment:
Q  326 gactctgcaaatacaaaaatctgtttaataacaacgccgtgatttcgacaattcgttcaaaattgtacgacttca 400  Q
    ||||||||||||||||||||||||||||||| |||  || |||||||| ||||| ||||||  |||| |||||||    
T  6638143 gactctgcaaatacaaaaatctgtttaataaaaacagcgcgatttcgataattccttcaaagatgtaagacttca 6638069  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 6641402 - 6641363
Alignment:
Q  340 aaaaatctgtttaataacaacgccgtgatttcgacaattc 379  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  6641402 aaaaatctgtttaataacaacaccgtgatttcgacaattc 6641363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 599
Target Start/End: Original strand, 950342 - 950406
Alignment:
Q  534 ttagagatgttgtgttgcttgtttttgccaacaaacaaagatctttcaaatgcaatgaatactgca 599  Q
    ||||||||| ||| |||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  950342 ttagagatgctgttttgcttgtttttgccaacaaac-aagatcttccaaatgcaatgaatgctgca 950406  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 535
Target Start/End: Original strand, 947103 - 947179
Alignment:
Q  459 atttgtgtaggtgaagatagggttaacattcacaaagttgttcagtaggttattcgtgaacaaggagatgataattt 535  Q
    ||||||||||||||| || |||||||| ||||| ||| ||||||||||||| || | ||| |||||||||| |||||    
T  947103 atttgtgtaggtgaaaatggggttaacgttcacgaagctgttcagtaggttgtttgcgaagaaggagatgagaattt 947179  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 39439657 - 39439730
Alignment:
Q  120 tagattcatctaatggctaatagtaagagaaggagagagaaggagac-aattttgaaggagatgatcaaattcc 192  Q
    ||||| |||||||||||||||| |||| |||| |||||||||||||| |||||||||||||| |||| ||||||    
T  39439657 tagatccatctaatggctaatattaagtgaagaagagagaaggagacaaattttgaaggagaggatccaattcc 39439730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 19814986 - 19815059
Alignment:
Q  120 tagattcatctaatggctaatagtaagagaaggagagagaaggaga-caattttgaaggagatgatcaaattcc 192  Q
    ||||| |||||||||||||||| |||| |||| |||||||||||||  |||||||||||||| |||| ||||||    
T  19814986 tagatccatctaatggctaatattaagtgaagaagagagaaggagataaattttgaaggagaggatccaattcc 19815059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 41782563 - 41782513
Alignment:
Q  403 agcaagaggctgagggcggggatttctttttctctcaaatcgaagaaaaaa 453  Q
    ||||||||||||||||  ||||||||||| |||||||||||||| ||||||    
T  41782563 agcaagaggctgagggaagggatttctttctctctcaaatcgaataaaaaa 41782513  T

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Target: scaffold0122 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 31304 - 31377
Alignment:
Q  120 tagattcatctaatggctaatagtaagagaaggagagagaaggagac-aattttgaaggagatgatcaaattcc 192  Q
    ||||| || ||||||||||||| |||| |||| |||||||||||||| |||||||||||||| |||| ||||||    
T  31304 tagatccacctaatggctaatattaagtgaagaagagagaaggagacaaattttgaaggagaggatccaattcc 31377  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 14188483 - 14188556
Alignment:
Q  120 tagattcatctaatggctaatagtaagagaaggagagagaaggagac-aattttgaaggagatgatcaaattcc 192  Q
    ||||| |||||||||||||||| |||| |||| ||||| |||||||| |||||||||||| | |||| ||||||    
T  14188483 tagatccatctaatggctaatattaagtgaagaagagaaaaggagacaaattttgaaggaaaggatccaattcc 14188556  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 10569970 - 10569927
Alignment:
Q  148 gaaggagagagaaggagacaattttgaaggagatgatcaaattc 191  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||    
T  10569970 gaaggagagagaatgagacaattttgaaggagaggatccaattc 10569927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 478 - 524
Target Start/End: Original strand, 14760072 - 14760118
Alignment:
Q  478 gggttaacattcacaaagttgttcagtaggttattcgtgaacaagga 524  Q
    |||||||||||||||||| |||||||| ||||||||| ||| |||||    
T  14760072 gggttaacattcacaaagctgttcagtcggttattcgcgaagaagga 14760118  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 593
Target Start/End: Original strand, 14767512 - 14767568
Alignment:
Q  536 agagatgttgtgttgcttgtttttgccaacaaacaaagatctttcaaatgcaatgaat 593  Q
    |||||||  ||||||||||| ||||||||||||| |||||||| | ||||||||||||    
T  14767512 agagatgcagtgttgcttgtgtttgccaacaaac-aagatcttcccaatgcaatgaat 14767568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 10570974 - 10571010
Alignment:
Q  149 aaggagagagaaggagacaattttgaaggagatgatc 185  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  10570974 aaggagagagaaggagacaattttgaagaagaggatc 10571010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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