View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21080_low_1 (Length: 785)
Name: NF21080_low_1
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 682; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 17 - 710
Target Start/End: Complemental strand, 37059735 - 37059042
Alignment:
| Q |
17 |
acaagttcatttcttgacaaatcaatcttgtttaactttataagattaccaagagagtttggaatatctcctgatatcttatttccatccagatacagcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37059735 |
acaagttcatttcttgacaaatcaatcttgtttaactttataagattaccaagagagtttggaatatctcctgatatcttatttccatccagatacagcc |
37059636 |
T |
|
| Q |
117 |
cttgtagttcctctaactgacctaactcctttggaatatctccactaattgaattgtagctcaagtttaacaacttcaagccactaagacgagaaatgga |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37059635 |
cttgtagttcgtctaactgacctaactcctttggaatatctccactaattgaattgtagctcaagtttaacaacttcaagccactaagacgagaaataga |
37059536 |
T |
|
| Q |
217 |
cgaaggtatacttccattgaaacgattctctcccatgtataatattgagagttccttggagagatttccaatggtttcaggaataacaccttcgagcatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37059535 |
cgaaggtatacttccattgaaacgattctctcccatgtataatattgagagttccttggagagatttccaatggtttcaggaataacacctttgagcatg |
37059436 |
T |
|
| Q |
317 |
tttccatcaattgcgagaaagttcaagtgagtactgtttgtcaatgaagtaatgaaatccagaccattgactcctgtggtgactatcctgttatagccaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37059435 |
tttccatcaattgcgagaaagttcaagtgagtactgtttgtcaatgaagtaatgaaatccagaccattgactcctgtggtgactatcctgttatagccaa |
37059336 |
T |
|
| Q |
417 |
tattatacatgtgaagaaatgggagatttcctaaaccaggtggaactattccttccaaatggttagaggccatacgaataaccctaatgtttgttaggtt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37059335 |
tattatacatgtgaagaaatgggagatttcctaaaccaggtggaactattccttccaaatggttagaggccatacgaataaccctaatgtttgttaggtt |
37059236 |
T |
|
| Q |
517 |
atgtaaagaccctggaatcctacctgtgaacttattgaaacaaaaattgaaaactagtagttttggaagtaaatgaccaacatcataaggaatctcaccc |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37059235 |
atgtaaagaccctggaatcctacctgtgaacttattgaaacaaaaattgaaaactagtagttttggaagtaaatgaccaacatcataaggaatctcaccc |
37059136 |
T |
|
| Q |
617 |
cagaaggaatttgcagctaaggccaagttaacaagggaagacaaattatatataacaggtggaacagttccagtaagattattaagagtgagat |
710 |
Q |
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| T |
37059135 |
cagaaggaatttgcagctaaggccaagttaacaagggaagacaaattatatataacaggtggaacagttccagtaagattattaagagtgagat |
37059042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 25 - 710
Target Start/End: Complemental strand, 37067203 - 37066518
Alignment:
| Q |
25 |
atttcttgacaaatcaatcttgtttaactttataagattaccaagagagtttggaatatctcctgatatcttatttccatccagatacagcccttgtagt |
124 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||| ||||||| |
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| T |
37067203 |
atttcttgacaaatcaatcttgtttaagtttatgagattaccaagagagtttggaatagctcctgttatcttatttccatccagatatagctcttgtagc |
37067104 |
T |
|
| Q |
125 |
tcctctaactgacctaactcctttggaatatctccactaattgaattgtagctcaagtttaacaacttcaagccactaagacgagaaatggacgaaggta |
224 |
Q |
| |
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|||||||| || |||||||| |||||||| || ||||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
37067103 |
tcctctaattggcctaactcatttggaatctcaccactgaatgaattgtattgcaagtttaacaacttcaagccactaagacgaccaatggacagcggta |
37067004 |
T |
|
| Q |
225 |
tacttccattgaaacgattctctcccatgtataatattgagagttccttggagagatttccaatggtttcaggaataacaccttcgagcatgtttccatc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
37067003 |
tacttccattgaaacgattctctcccatgtataatattgagagttccttggagagatttccaatggtttcagaaataacaccttcgaccatgtttccatc |
37066904 |
T |
|
| Q |
325 |
aattgcgagaaagttcaagtgagtactgtttgtcaatgaagtaatgaaatccagaccattgactcctgtggtgactatcctgttatagccaatattatac |
424 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37066903 |
aattgcgagaaagttcaagtgagtactgtttgtcaatgaagtaatgaaatccaaaccattgactcctgcattgactatcctgttatagccaatattatac |
37066804 |
T |
|
| Q |
425 |
atgtgaagaaatgggagatttcctaaaccaggtggaactattccttccaaatggttagaggccatacgaataaccctaatgtttgttaggttatgtaaag |
524 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
37066803 |
atgtgaagaaatgggagatttcctaaaccaggtggaactgttccttccaaatggttagaggccatacggataaccctaatgtttgttaggttatgcaaag |
37066704 |
T |
|
| Q |
525 |
accctggaatcctacctgtgaacttattgaaacaaaaattgaaaactagtagttttggaagtaaatgaccaacatcataaggaatctcaccccagaagga |
624 |
Q |
| |
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| |||||||| |||||||||||||||||||||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||||||| | ||||| |
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| T |
37066703 |
atcctggaattctacctgtgaacttattgaaacaaaaattgaacactaatagctttggaagtttatgaccaacatcataaggaatctcacccgaaaagga |
37066604 |
T |
|
| Q |
625 |
atttgcagctaaggccaagttaacaagggaagacaaattatatataacaggtggaacagttccagtaagattattaagagtgagat |
710 |
Q |
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|||| |||||| | |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||| |||||| |
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| T |
37066603 |
gtttgaagctaaaggcaagttaacaagggaagacaaattgtaaataactggtggaacagttccagtaagattgttaagaatgagat |
37066518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 704 - 767
Target Start/End: Original strand, 37059138 - 37059201
Alignment:
| Q |
704 |
gtgagattccttatgatattggtcatttacttccaaaactgctagttttcaatttttgtttcaa |
767 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37059138 |
gtgagattccttatgatgttggtcatttacttccaaaactactagttttcaatttttgtttcaa |
37059201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 704 - 767
Target Start/End: Original strand, 37066614 - 37066677
Alignment:
| Q |
704 |
gtgagattccttatgatattggtcatttacttccaaaactgctagttttcaatttttgtttcaa |
767 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||| || |||| ||||||||||||||||| |
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| T |
37066614 |
gtgagattccttatgatgttggtcataaacttccaaagctattagtgttcaatttttgtttcaa |
37066677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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