View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21080_low_12 (Length: 374)
Name: NF21080_low_12
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 342
Target Start/End: Complemental strand, 21129876 - 21129543
Alignment:
| Q |
10 |
acatcatcagacgatagttcgtaagggaggtcatcagacagatatttggcaattgcactgtcaccaacatcaaaagtaacttc-tttagaatcagaagtg |
108 |
Q |
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| T |
21129876 |
acatcatcagacgatagttcataagggaggtcatcagacagatatttggcaattgcactgtcaccaacatcaaaagtaacttcgtttagaatcagaagtg |
21129777 |
T |
|
| Q |
109 |
atatttttacaaaactttggcaacaaaacttcgacaataatttgatggttaacgccgttctattaagtgaatgattaaagaatacgataaataagttgtg |
208 |
Q |
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| T |
21129776 |
atatttttacaaaaatttggcaacaaaacttcgacaataatttgatggttaacgccgttctattaagtgaatgattaaagaatacgataaataaggtgtg |
21129677 |
T |
|
| Q |
209 |
acaactcattaatcatccactaaatgcaattaaccgcaattttaaacggtttcaagtgttcaaatatacctgatatctattaaccatcgaaattgtgtgc |
308 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21129676 |
acaactcattaatcatccactaaatgtaattaaccgcaattttaaacgttttcaagtgttcaaatatacctgatatctattaaccatcgaaattgtgtgt |
21129577 |
T |
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| Q |
309 |
ggaaagatatacatgattttcaaacattcaaata |
342 |
Q |
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| T |
21129576 |
ggaaagatatacatgattttgaaacattcaaata |
21129543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 11595125 - 11595081
Alignment:
| Q |
210 |
caactcattaatcatccactaaatgcaattaaccgcaattttaaa |
254 |
Q |
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| T |
11595125 |
caactcattaatcattcactaaatacaattaaccacaattttaaa |
11595081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 40939403 - 40939444
Alignment:
| Q |
214 |
tcattaatcatccactaaatgcaattaaccgcaattttaaac |
255 |
Q |
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| T |
40939403 |
tcattaatcatccgctaaatgtaattaaccgcaatattaaac |
40939444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 28303268 - 28303304
Alignment:
| Q |
258 |
tttcaagtgttcaaatatacctgatatctattaacca |
294 |
Q |
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| T |
28303268 |
tttcaagttttcaaatatacatgatatctattaacca |
28303304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 10407800 - 10407760
Alignment:
| Q |
266 |
gttcaaatatacctgatatctattaaccatcgaaattgtgt |
306 |
Q |
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| T |
10407800 |
gttcaaatatacatgatatttattaaccatccaaattgtgt |
10407760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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