View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21080_low_13 (Length: 371)
Name: NF21080_low_13
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 44705930 - 44706271
Alignment:
| Q |
19 |
aatacatcttcataaatgttcatccatgtttcataactgttagacaacttttacattacatcactataacaataaacaagaatcgtcctcacacaaaaaa |
118 |
Q |
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| T |
44705930 |
aatacatcttcataaatgttcatccatgtttcataactgttagacaacttttacattacatcactataacaataaacaagaatcgtcctcacacaaaaaa |
44706029 |
T |
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| Q |
119 |
ttgagatttgaatgaagactgactatattactaagcaaaactaaatcaatgcaactgtactcataatgttaaggattgagatttgagaatgaactcaagt |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44706030 |
ttgagatttgaatgaagactgactatataactaagcaaaactaaatcaatgcaactgtactcataatgttaaggattgagatttgagaatgaactcaagt |
44706129 |
T |
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| Q |
219 |
ctcatataatcccaaacctactatcatcacttgatttaacaggctcttttggagaagtacttccaactgaaggtttctcagagtgtatatgtgacaattc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44706130 |
ctcatataatcccaaacctactatcatcacttgatttaacaggatcttttggagaagtatttccaactgaaggtttctcagagtgtatatgtgacaattc |
44706229 |
T |
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| Q |
319 |
atcaactacatctttcctttcactgtaaatgatctctttctt |
360 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44706230 |
atcaactacatccttcctttcactgtaaatgatctctttctt |
44706271 |
T |
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