View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21080_low_16 (Length: 316)
Name: NF21080_low_16
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 32 - 298
Target Start/End: Complemental strand, 13878788 - 13878522
Alignment:
| Q |
32 |
gtacattcacaaatgggaccattgctggagggactgaagtttacaaataccaagaagaatctatcgacagttcaaaaagctaaagagaagagcgagggtt |
131 |
Q |
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| T |
13878788 |
gtacattcacaaatgggaccattgctggagggactgaagtttacaaataccaagaagaatctatcgacagttcaaaaagctaaagagaagagcgagggtg |
13878689 |
T |
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| Q |
132 |
agttatctccaaatggagactttgaataggacaattttgcagtttattatcatgttaacctgtgagttgaataggtatatagattgattatcattggttt |
231 |
Q |
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| T |
13878688 |
agttatctccaaatggagactttgaataggacaattttgcagtttattatcatgttaacctgtgagttgaataggtatatagattgattatcattggttt |
13878589 |
T |
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| Q |
232 |
gcagcaagttaagatattgggagcagatagatggtctcattctattatgaaaccagcttgagttaat |
298 |
Q |
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| T |
13878588 |
gcagcaagttaagatattgggagcagatagatggtctcaatctattatgaaaccagcttgagttaat |
13878522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 13884263 - 13884122
Alignment:
| Q |
32 |
gtacattcacaaatgggaccattgctggagggactgaagtttacaaataccaagaagaatctatcgacagttcaaaaagctaaagagaagagcgagggtt |
131 |
Q |
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| T |
13884263 |
gtacattcacaaatggggccattgctggaggcactgaagttagcagataccaagaagaatcgatcgacagttcaaaa-gtaaaagagaagagtgtg---- |
13884169 |
T |
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| Q |
132 |
agttatctccaaatggagactttgaataggacaattttgcagtttat |
178 |
Q |
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| T |
13884168 |
agttatctccaaatggaaactttgaagaggttaatttttcagtttat |
13884122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 16024946 - 16024811
Alignment:
| Q |
39 |
cacaaatgggaccattgctggagggactgaagtttacaaataccaagaagaatcta-tcgacagttcaaaaagctaaagagaagagcgagggttagttat |
137 |
Q |
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| T |
16024946 |
cacaaatggggccgttgctggaggcactgaagtgtgcagataccaagaggaatcgaatccacagttcaaaa-gcgaaagagaagag----ggtgagttat |
16024852 |
T |
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| Q |
138 |
ctccaaatggagactttgaataggacaattttgcagtttat |
178 |
Q |
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| T |
16024851 |
ctccaaatggagactttgaagaggataattttgcagtttat |
16024811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 296
Target Start/End: Original strand, 14367071 - 14367182
Alignment:
| Q |
182 |
catgttaacctgtgagttgaataggtatatagattgatta-tcattggtttgcagcaagttaagatattgggagcagatagatggtctcattctattatg |
280 |
Q |
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| T |
14367071 |
catgttaacctgtgagtggaataggaatttagattgattactatttggtttacagcaagttcagatattgggagc----agatggtctcattctaatata |
14367166 |
T |
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| Q |
281 |
aaaccagcttgagtta |
296 |
Q |
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| T |
14367167 |
aaaccagcttgtgtta |
14367182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 178
Target Start/End: Complemental strand, 13882454 - 13882313
Alignment:
| Q |
33 |
tacattcacaaatgggaccattgctggagggactgaagtttacaaataccaagaagaatc-tatcgacagttcaaaaagctaaagagaagagcgagggtt |
131 |
Q |
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||||||||| | |||| |||| |||||||| |||||||||| || ||||||||||||||| ||| ||||||| |||||| ||||||||||| ||| |
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| T |
13882454 |
tacattcacgattggggccatcgctggaggcactgaagtttgcagataccaagaagaatcaaatcaacagttc-aaaagccaaagagaagagggag---- |
13882360 |
T |
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| Q |
132 |
agttatctccaaatggagactttgaataggacaattttgcagtttat |
178 |
Q |
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| T |
13882359 |
agttatcttgaaatggaaactttgaagaggatagtttttcagtttat |
13882313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 13881339 - 13881258
Alignment:
| Q |
211 |
tagattgattatcattggtttgcagcaagttaagatattgggagcagatagatggtctcattctattatgaaaccagcttgagtta |
296 |
Q |
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| T |
13881339 |
tagattgactatcattggattgcagaaagttaagatattggaagc----agatggtctcatcctatcataaaaccagcttgtgtta |
13881258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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