View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21080_low_17 (Length: 315)
Name: NF21080_low_17
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 71 - 297
Target Start/End: Complemental strand, 13878748 - 13878522
Alignment:
| Q |
71 |
ttacaaataccaagaagaatctatcgacagttcaaaaagctaaagagaagagcgagggttagttatctccaaatggagactttgaataggacaattttgc |
170 |
Q |
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| T |
13878748 |
ttacaaataccaagaagaatctatcgacagttcaaaaagctaaagagaagagcgagggtgagttatctccaaatggagactttgaataggacaattttgc |
13878649 |
T |
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| Q |
171 |
agtttattatcatgttaacctgtgagttgaataggtatatagattgattatcattggtttgcagcaagttaagatattgggagcagatagatggtctcat |
270 |
Q |
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| T |
13878648 |
agtttattatcatgttaacctgtgagttgaataggtatatagattgattatcattggtttgcagcaagttaagatattgggagcagatagatggtctcaa |
13878549 |
T |
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| Q |
271 |
tctattatgaaaccagcttgagttaat |
297 |
Q |
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| T |
13878548 |
tctattatgaaaccagcttgagttaat |
13878522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 14367071 - 14367182
Alignment:
| Q |
181 |
catgttaacctgtgagttgaataggtatatagattgatta-tcattggtttgcagcaagttaagatattgggagcagatagatggtctcattctattatg |
279 |
Q |
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| T |
14367071 |
catgttaacctgtgagtggaataggaatttagattgattactatttggtttacagcaagttcagatattgggagc----agatggtctcattctaatata |
14367166 |
T |
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| Q |
280 |
aaaccagcttgagtta |
295 |
Q |
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| T |
14367167 |
aaaccagcttgtgtta |
14367182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 16024864 - 16024811
Alignment:
| Q |
124 |
gagggttagttatctccaaatggagactttgaataggacaattttgcagtttat |
177 |
Q |
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| T |
16024864 |
gagggtgagttatctccaaatggagactttgaagaggataattttgcagtttat |
16024811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 13881339 - 13881258
Alignment:
| Q |
210 |
tagattgattatcattggtttgcagcaagttaagatattgggagcagatagatggtctcattctattatgaaaccagcttgagtta |
295 |
Q |
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| T |
13881339 |
tagattgactatcattggattgcagaaagttaagatattggaagc----agatggtctcatcctatcataaaaccagcttgtgtta |
13881258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 13884217 - 13884122
Alignment:
| Q |
77 |
ataccaagaagaatctatcgacagttcaaaaagctaaagagaagagcgagggttagttatctccaaatggagactttgaataggacaattttgcagttta |
176 |
Q |
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| T |
13884217 |
ataccaagaagaatcgatcgacagttcaaaa-gtaaaagagaagagtgtg----agttatctccaaatggaaactttgaagaggttaatttttcagttta |
13884123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 13871990 - 13872045
Alignment:
| Q |
3 |
ttgcagaatcaccaacccaaaccatgagaaagaaacaaaaattcagcaatacatta |
58 |
Q |
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| T |
13871990 |
ttgcagaatcaccactctaaaccatgataaagaaacaaacattcagcagtacatta |
13872045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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