View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21080_low_19 (Length: 270)
Name: NF21080_low_19
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 6316027 - 6315791
Alignment:
| Q |
15 |
tgtttaacatctgtcgtggctgctgttatttcatcagtttagtacccattgcgatctattgccgctgtgtttgttctgcttgcatattaggatcggatca |
114 |
Q |
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| T |
6316027 |
tgtttaacatctgtcgtggctgctgttatttcatcagtttagtacccattgcgatctattgccgctgtgtttgttctgcttgcatattaggatcggatca |
6315928 |
T |
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| Q |
115 |
atgtgcagcattcatttgtaagcttaggtaggtgtggcgtgtgtgttaaataattggctttatttgatctgtaacattatagtacaagatgcttgtgagt |
214 |
Q |
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| T |
6315927 |
atgtgcagcattcatttgtaagcttaggtaggtgtgccgtgtgtgttaaataattggctttatttgatctgtaacattatagtacaagatgcttgtgagt |
6315828 |
T |
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| Q |
215 |
tgtgaccaatactgtaatcttttttatcattggtatg |
251 |
Q |
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| T |
6315827 |
tgtgaccaatactgtaatcttttttatcattggtatg |
6315791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 55323510 - 55323357
Alignment:
| Q |
15 |
tgtttaacatctgtcgtggctgct-gttatttcatcagtttagtacccattg-cgatctattgccgctgtgtttgttctgct-----tgcatattaggat |
107 |
Q |
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| T |
55323510 |
tgtttaacatctgttgtggcttattgttatttcatcagtttagtacccattgacgatgtgttgccgctgtgtttgctctgctgcatttgtatattaggac |
55323411 |
T |
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| Q |
108 |
cggatcaatgtgcagcattcatttgta-agcttaggtaggtgtggcgtgtgtgt |
160 |
Q |
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| T |
55323410 |
ccgatcaatgtgcaacattcatttgtagtgcttaggtaggtgtgcggtgtgtgt |
55323357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 51819827 - 51819771
Alignment:
| Q |
162 |
aaataattggctttatttgatctgtaacattatagtacaagatgcttgtgagttgtg |
218 |
Q |
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|||||||||||||| | ||||||||| || ||| |||||||||||||||||||||| |
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| T |
51819827 |
aaataattggctttgtctgatctgtatcacaataatacaagatgcttgtgagttgtg |
51819771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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