View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21080_low_23 (Length: 237)
Name: NF21080_low_23
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25868502 - 25868286
Alignment:
| Q |
1 |
aagtcacaagcgatccaacaggtttttatttgaccgaacataatttgtatactgtaattgaacatgctatgtttttccttttatagtatatatttgtatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
25868502 |
aagtcacaagcgatccaacaggtttttatttgacagaacataatttgtatactgtaattgaacatgct--gtttttccttttatagtatat--ttgtatg |
25868407 |
T |
|
| Q |
101 |
attttcatttcaccaacttgtgttctttctaaaccaaataatagttctttaagatgtgcattatttggcagtgatccaatgaaatggagaataatgaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25868406 |
attttcatttcaccaacttgtgttctttctaaaccaaataatagttctttaagatatgcattatttggcagtgatccaatgaaatggagaataatgaaag |
25868307 |
T |
|
| Q |
201 |
atgaatttgtgaacaacagtg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
25868306 |
atgaatttgtgaacaacagtg |
25868286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 25866514 - 25866416
Alignment:
| Q |
15 |
ccaacaggtttttatttgaccgaacataatttgtatactgtaattgaacatgctatgtttttccttttatagtatatatttgtatgattttcatttcacc |
114 |
Q |
| |
|
||||||||||||| || ||| ||||| ||||| |||||| ||||||||||| ||||| ||||||||| |||||||| ||||| ||||||| ||||| || |
|
|
| T |
25866514 |
ccaacaggtttttgtt-gacagaacagaatttatatactataattgaacat--tatgtctttccttttctagtatatttttgtctgatttttatttctcc |
25866418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University