View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21080_low_26 (Length: 205)

Name: NF21080_low_26
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21080_low_26
NF21080_low_26
[»] chr6 (27 HSPs)
chr6 (5-188)||(26861375-26861557)
chr6 (1-108)||(31284126-31284233)
chr6 (1-114)||(27593262-27593375)
chr6 (1-114)||(27677856-27677969)
chr6 (5-108)||(27678784-27678887)
chr6 (1-108)||(27706644-27706751)
chr6 (11-108)||(26622814-26622911)
chr6 (11-108)||(26728792-26728889)
chr6 (11-86)||(26884023-26884098)
chr6 (1-126)||(27338307-27338432)
chr6 (1-126)||(27399047-27399172)
chr6 (1-116)||(26655819-26655934)
chr6 (1-116)||(26761790-26761905)
chr6 (1-108)||(27229070-27229177)
chr6 (5-116)||(28786108-28786219)
chr6 (5-116)||(28792229-28792340)
chr6 (5-125)||(27698740-27698860)
chr6 (5-125)||(27725091-27725211)
chr6 (1-108)||(26802280-26802387)
chr6 (1-108)||(28780977-28781084)
chr6 (5-125)||(27718625-27718745)
chr6 (5-108)||(27611248-27611351)
chr6 (1-86)||(26823700-26823785)
chr6 (8-84)||(28325343-28325419)
chr6 (1-84)||(27604947-27605030)
chr6 (42-108)||(26018770-26018836)
chr6 (42-108)||(26139474-26139540)
[»] chr4 (5 HSPs)
chr4 (20-116)||(18724333-18724429)
chr4 (20-116)||(18699648-18699744)
chr4 (20-108)||(18731752-18731840)
chr4 (20-108)||(18655725-18655813)
chr4 (20-108)||(18679815-18679903)
[»] chr1 (3 HSPs)
chr1 (20-116)||(28164610-28164706)
chr1 (20-85)||(28127928-28127993)
chr1 (20-113)||(268605-268698)
[»] scaffold0277 (2 HSPs)
scaffold0277 (5-116)||(4917-5028)
scaffold0277 (1-108)||(13874-13981)
[»] scaffold0349 (3 HSPs)
scaffold0349 (5-125)||(3668-3788)
scaffold0349 (5-125)||(14601-14721)
scaffold0349 (19-125)||(8061-8167)
[»] scaffold1254 (1 HSPs)
scaffold1254 (1-116)||(159-274)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-116)||(7355-7470)
[»] chr8 (1 HSPs)
chr8 (20-108)||(29274031-29274119)
[»] scaffold0038 (1 HSPs)
scaffold0038 (8-84)||(116658-116734)
[»] scaffold0713 (1 HSPs)
scaffold0713 (42-108)||(5916-5982)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 26861557 - 26861375
Alignment:
Q  5 ccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26861557 ccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacctggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatag 26861458  T
Q  105 ccatcagaattgggataaataattggatgagaaaaaatagtttgggaatgcaaactatgaacaaataagtaactgtggtctgtg 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26861457 ccatcagaatt-ggataaataattggatgagaaaaaatagtttaggaatgcaaactatgaacaaataagtaactgtggtctgtg 26861375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 31284233 - 31284126
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| |||||||||||| ||| |||||||    
T  31284233 attgccggtgaaaccataccgagtgtcacttcccctgaaactaaggaatacttggtatttgaatacataggaaattgaagaggaagaggaagatgattgc 31284134  T
Q  101 atagccat 108  Q
    ||||||||    
T  31284133 atagccat 31284126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27593262 - 27593375
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||| |||| ||||||| |||||||||||    
T  27593262 attgccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaatacttggtatttgtaatcataggaaattgaagtggaagaggaaggtgattgc 27593361  T
Q  101 atagccatcagaat 114  Q
    |||||||| |||||    
T  27593362 atagccatgagaat 27593375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27677856 - 27677969
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| |  |||||||||| |||| ||||||| |||||||||||    
T  27677856 attgccggtgaaaccgtaccgagtgtcacttcctctgaaattgaggaatacttggtatttgtactcataggaaattgaagtggaagaggaaggtgattgc 27677955  T
Q  101 atagccatcagaat 114  Q
    |||||||| |||||    
T  27677956 atagccatgagaat 27677969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 27678887 - 27678784
Alignment:
Q  5 ccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatag 104  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||| |||| ||||||| |||||||||||||||    
T  27678887 ccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaatacttggtatttgtactcataggaaattgaagtggaagaggaaggtgattgcatag 27678788  T
Q  105 ccat 108  Q
    ||||    
T  27678787 ccat 27678784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 27706644 - 27706751
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    |||||| || ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |  |||||||||| |||| ||||||| |||||||||||    
T  27706644 attgcctgtgaaaccgtaccgagtgtcacctcctctgaaactgaggaatacttggtatttgtactcataggaaattgaagtggaagagaaaggtgattgc 27706743  T
Q  101 atagccat 108  Q
    ||||||||    
T  27706744 atagccat 27706751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 26622911 - 26622814
Alignment:
Q  11 aaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccat 108  Q
    ||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||  ||||||||| |||||||||||| | |||||||||||||||||    
T  26622911 aaaccgtaccgagtgtcactgcctctgaaacttaggaacacttggtatttgaattgataggaaattgaagaggaagaggatggtgattgcatagccat 26622814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 26728889 - 26728792
Alignment:
Q  11 aaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccat 108  Q
    ||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||  ||||||||| |||||||||||| | |||||||||||||||||    
T  26728889 aaaccgtaccgagtgtcactgcctctgaaacttaggaacacttggtatttgaattgataggaaattgaagaggaagaggatggtgattgcatagccat 26728792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 26884098 - 26884023
Alignment:
Q  11 aaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaag 86  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||  ||||||||||    
T  26884098 aaaccataccgagtgtcacttcctctgaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggaag 26884023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 27338307 - 27338432
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    ||||||||||||||| ||  |||||||| |  | || ||||||||||| || ||||||||||| ||| ||||||| |||||||||||| || ||||||||    
T  27338307 attgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagaggaagaggaaagtgattgc 27338406  T
Q  101 atagccatcagaattgggataaataa 126  Q
    |||||||| ||||||| || ||||||    
T  27338407 atagccatgagaattgagagaaataa 27338432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 27399047 - 27399172
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    ||||||||||||||| ||  |||||||| |  | || ||||||||||| || ||||||||||| ||| ||||||| |||||||||||| || ||||||||    
T  27399047 attgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagaggaagaggaaagtgattgc 27399146  T
Q  101 atagccatcagaattgggataaataa 126  Q
    |||||||| ||||||| || ||||||    
T  27399147 atagccatgagaattgagagaaataa 27399172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 26655934 - 26655819
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    ||||||||||||||| | ||| |||||| | || || ||||||||||| ||||||||||| || ||||||||||  |||||||| ||| ||||||||||     
T  26655934 attgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgt 26655835  T
Q  101 atagccatcagaattg 116  Q
    |||||||| |||||||    
T  26655834 atagccatgagaattg 26655819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 26761905 - 26761790
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    ||||||||||||||| | ||| |||||| | || || ||||||||||| ||||||||||| || ||||||||||  |||||||| ||| ||||||||||     
T  26761905 attgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgt 26761806  T
Q  101 atagccatcagaattg 116  Q
    |||||||| |||||||    
T  26761805 atagccatgagaattg 26761790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 27229177 - 27229070
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    ||||||||||||||| | |||||||||| | || || ||||| ||||| ||||||||  |||||||| ||||||  |||||||||||| ||||||||||     
T  27229177 attgccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgt 27229078  T
Q  101 atagccat 108  Q
    ||||||||    
T  27229077 atagccat 27229070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 28786219 - 28786108
Alignment:
Q  5 ccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatag 104  Q
    ||||||||||| |  ||||||||| | || || ||||||||||| ||||||||  |||||||||||||||  |||||||| ||| |||||||||| ||||    
T  28786219 ccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatag 28786120  T
Q  105 ccatcagaattg 116  Q
    |||| |||||||    
T  28786119 ccataagaattg 28786108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 28792340 - 28792229
Alignment:
Q  5 ccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatag 104  Q
    ||||||||||| |  ||||||||| | || || ||||||||||| ||||||||  |||||||||||||||  |||||||| ||| |||||||||| ||||    
T  28792340 ccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatag 28792241  T
Q  105 ccatcagaattg 116  Q
    |||| |||||||    
T  28792240 ccataagaattg 28792229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 27698740 - 27698860
Alignment:
Q  5 ccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatag 104  Q
    ||||||||||| | |||||||||| | || || ||||||| ||| ||||||||  |||||||||||||||  |||| ||| ||| |||||||||| ||||    
T  27698740 ccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatag 27698839  T
Q  105 ccatcagaattgggataaata 125  Q
    |||| ||||||| || |||||    
T  27698840 ccatgagaattgagagaaata 27698860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 27725091 - 27725211
Alignment:
Q  5 ccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatag 104  Q
    ||||||||||| | |||||||||| | || || ||||| ||||| ||||||||  |||||||||||||||  |||||||| ||| |||||||||| ||||    
T  27725091 ccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatag 27725190  T
Q  105 ccatcagaattgggataaata 125  Q
    |||| | ||||| || |||||    
T  27725191 ccatgacaattgagagaaata 27725211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 26802387 - 26802280
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    |||||| |||||||| |||||||||||| | || || ||||||||||| ||||||||  |||||||||| ||||  |||||||| ||| |||| || |||    
T  26802387 attgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagaggatgaggaaggagactgc 26802288  T
Q  101 atagccat 108  Q
    ||||||||    
T  26802287 atagccat 26802280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 28781084 - 28780977
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    ||||||||||||||| |  ||||||||| | || || ||||||||||| ||||||||  ||||| || ||||||  |||||||||||| ||||| |||||    
T  28781084 attgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgc 28780985  T
Q  101 atagccat 108  Q
    ||||||||    
T  28780984 atagccat 28780977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 27718625 - 27718745
Alignment:
Q  5 ccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatag 104  Q
    ||||||||||  | |||||||||| | || || ||||||||||| ||||||||  ||||||||| ||| |  |||||||| ||| |||||||||| ||||    
T  27718625 ccggtaaaactgtgccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatag 27718724  T
Q  105 ccatcagaattgggataaata 125  Q
    |||| ||||||| || |||||    
T  27718725 ccatgagaattgagagaaata 27718745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 27611248 - 27611351
Alignment:
Q  5 ccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatag 104  Q
    ||||||||||| |  ||||||||| | || || ||||||||||| ||||||||  |||||||||||||||  ||||| |||||| ||| | |||||||||    
T  27611248 ccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaagaagaggaagctaattgcatag 27611347  T
Q  105 ccat 108  Q
    ||||    
T  27611348 ccat 27611351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 26823785 - 26823700
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaag 86  Q
    ||||||||||||  ||||||||||||||   ||||| |||||||| || ||||||||||||||  |||| ||||  ||||||||||    
T  26823785 attgccggtaaattcataccgagtgtcagcgcctctaaaactgagaaacacttggtatttgaaatcatatgaaactgaagaggaag 26823700  T

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Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 28325419 - 28325343
Alignment:
Q  8 gtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagagga 84  Q
    ||||||||||| ||||||||||| ||||| ||||| ||||| || |  ||  ||||||||||||||| |||||||||    
T  28325419 gtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 28325343  T

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Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27604947 - 27605030
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagagga 84  Q
    ||||||||||||||| || ||||||||| | || || ||||| ||||| ||||||||  ||||| |||||||||  ||||||||    
T  27604947 attgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 27605030  T

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Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 26018770 - 26018836
Alignment:
Q  42 tgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccat 108  Q
    ||||||| ||||||||| ||| ||||||||||| ||| |||| |||  |||||||||| ||||||||    
T  26018770 tgaggaacacttggtatgtgagtccataggaaaaggatgaggtagacgaaggtgattgaatagccat 26018836  T

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Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 26139474 - 26139540
Alignment:
Q  42 tgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccat 108  Q
    ||||||| ||||||||| ||| ||||||||||| ||| |||| |||| |||||||||| ||| ||||    
T  26139474 tgaggaacacttggtatgtgagtccataggaaaaggatgaggtagaggaaggtgattgaataaccat 26139540  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 18724333 - 18724429
Alignment:
Q  20 cgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccatcagaattg 116  Q
    ||||||||||| || ||||| |||||||| ||||||||  |||||| ||||||||  |||||||| ||| ||||||||||||||||||| |||||||    
T  18724333 cgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattg 18724429  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 18699648 - 18699744
Alignment:
Q  20 cgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccatcagaattg 116  Q
    ||||||||| | || ||||| |||||||| ||||||||  |||||| ||||||||  |||||||| ||| ||||||||||||||||||| |||||||    
T  18699648 cgagtgtcagtgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattg 18699744  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 18731752 - 18731840
Alignment:
Q  20 cgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccat 108  Q
    ||||||||||| || ||||| |||||||| ||||||||  |||||| ||||||||  |||||||| ||| |||||||||||||||||||    
T  18731752 cgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccat 18731840  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 18655725 - 18655813
Alignment:
Q  20 cgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccat 108  Q
    ||||||||||| || ||||| |||||||| ||||||||  |||||| ||||||||  |||||||| ||| ||||||||||| |||||||    
T  18655725 cgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcctagccat 18655813  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 18679815 - 18679903
Alignment:
Q  20 cgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccat 108  Q
    ||||||||||| || ||||| |||||||| ||||||||  |||||| ||||||||  |||||| | ||| |||||||||||||||||||    
T  18679815 cgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagagaatgaggaaggtgattgcatagccat 18679903  T

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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 28164610 - 28164706
Alignment:
Q  20 cgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccatcagaattg 116  Q
    ||||||||||| || || ||||||||||| ||||||||| |||||||||||||||| |||||||||||| || | ||| | |||||||| |||||||    
T  28164610 cgagtgtcactgcccctaaaactgaggaacacttggtatgtgaatccataggaaattgaagaggaagaggaatgcgatcgtatagccatgagaattg 28164706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 28127928 - 28127993
Alignment:
Q  20 cgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaa 85  Q
    ||||||||||| || ||||| |||||||| ||||||||| |||||||||||||||| |||||||||    
T  28127928 cgagtgtcactgcccctgaagctgaggaacacttggtatgtgaatccataggaaattgaagaggaa 28127993  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 268605 - 268698
Alignment:
Q  20 cgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccatcagaa 113  Q
    ||||||||||  ||||||||  ||||||| || |||||    |||||||| || || |||||||||||| ||||||||||||||||||| ||||    
T  268605 cgagtgtcaccgcctctgaagttgaggaagacctggtaggcaaatccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaa 268698  T

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Target: scaffold0277 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 4917 - 5028
Alignment:
Q  5 ccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatag 104  Q
    ||||||||||| |  ||||||||| | || || ||||||||||| ||||||||  |||||||||||||||  |||||||| ||| |||||||||| ||||    
T  4917 ccggtaaaaccgtggcgagtgtcaatgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatag 5016  T
Q  105 ccatcagaattg 116  Q
    |||| |||||||    
T  5017 ccataagaattg 5028  T

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Target: scaffold0277; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 13874 - 13981
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    ||||||||||||||| |  ||||||||| | || || ||||||||||| ||||||||  ||||| || ||||||  |||||||||||| ||||| |||||    
T  13874 attgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgc 13973  T
Q  101 atagccat 108  Q
    ||||||||    
T  13974 atagccat 13981  T

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Target: scaffold0349 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 3668 - 3788
Alignment:
Q  5 ccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatag 104  Q
    ||||||||||| | |||||||||| | || || ||||| ||||| ||||||||  |||||||||||||||  |||||||| ||| |||||||||| ||||    
T  3668 ccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatag 3767  T
Q  105 ccatcagaattgggataaata 125  Q
    |||| | ||||| || |||||    
T  3768 ccatgacaattgagagaaata 3788  T

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Target: scaffold0349; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 14601 - 14721
Alignment:
Q  5 ccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatag 104  Q
    ||||||||||| | |||||||||| | || || ||||||| ||| ||||||||  |||||||||||||||  |||| ||| ||| |||||||||| ||||    
T  14601 ccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatag 14700  T
Q  105 ccatcagaattgggataaata 125  Q
    |||| ||||||| || |||||    
T  14701 ccatgagaattgagagaaata 14721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 8061 - 8167
Alignment:
Q  19 ccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccatcagaattggg 118  Q
    |||||||||| | || || ||||||||||| ||||||||  ||||||||| ||| |  |||||||| ||| |||||||||| |||||||| ||||||| |    
T  8061 ccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgag 8160  T
Q  119 ataaata 125  Q
    | |||||    
T  8161 agaaata 8167  T

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Target: scaffold1254 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 159 - 274
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    ||||||||||||||| |  ||||||||| | || || ||||| ||||| ||||||||  ||||| |||| ||||  ||||||||||||  ||||||||||    
T  159 attgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgc 258  T
Q  101 atagccatcagaattg 116  Q
    |||||||| |||||||    
T  259 atagccatgagaattg 274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7470 - 7355
Alignment:
Q  1 attgccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgc 100  Q
    ||||||||||||||| |  ||||||||| | || || ||||| ||||| ||||||||  ||||| |||| ||||  ||||||||||||  ||||||||||    
T  7470 attgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgc 7371  T
Q  101 atagccatcagaattg 116  Q
    |||||||| |||||||    
T  7370 atagccatgagaattg 7355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 29274031 - 29274119
Alignment:
Q  20 cgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccat 108  Q
    ||||||||||  ||||| ||  ||||||| || |||||  |||||||||| || || |||||||||||| |||||||||||||||||||    
T  29274031 cgagtgtcaccgcctctaaagttgaggaagacctggtaagtgaatccatatgagattgaagaggaagaggaaggtgattgcatagccat 29274119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 116734 - 116658
Alignment:
Q  8 gtaaaaccataccgagtgtcacttcctctgaaactgaggaatacttggtatttgaatccataggaaatggaagagga 84  Q
    ||||||||||| ||||||||||| ||||| ||||| ||||| || |  ||  ||||||||||||||| |||||||||    
T  116734 gtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 116658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 5982 - 5916
Alignment:
Q  42 tgaggaatacttggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccat 108  Q
    ||||||| ||||||||| ||| ||||||||||| ||| |||| |||| |||||||||| ||| ||||    
T  5982 tgaggaacacttggtatgtgagtccataggaaaaggatgaggtagaggaaggtgattgaataaccat 5916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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