View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21080_low_4 (Length: 618)
Name: NF21080_low_4
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 232 - 606
Target Start/End: Complemental strand, 22826345 - 22825989
Alignment:
| Q |
232 |
ttcaacaaatacatcttgttacagatagaagtgaagggagtgaattagaaccgaggaaaatatgaacacaccaaaaggatgatccgacggtgtagaactt |
331 |
Q |
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| T |
22826345 |
ttcaacaaatacatcttgttacagatagaagtgaagggagtgaattagaaccgaggaaaatatgaacacaccaaaaggatgatccgacggtgtagaactt |
22826246 |
T |
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| Q |
332 |
gaaagcatgccaaaattatgacataatagaggaaaattggctgcaaacacagccagcttacctaaatatgggacccacttgctgaaatttccgacagtag |
431 |
Q |
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| T |
22826245 |
gaaagcatgccgaaattatgacataatagaggaaaattggctgcaaacacagccagcttacctaaatatgggacccacttgctgaaatttccgacagtag |
22826146 |
T |
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| Q |
432 |
tggtggctaacagcagatgagcacaaggagaagaaaattcacaaaaatagtgaagttgtggccaggctctaattgtaagttggtgcacatggctgctcca |
531 |
Q |
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| T |
22826145 |
tggtggctgacagcagatgagc------------------acaaaaatagtgaagttgtggccaggctctaattgtaagttggtgcacatggctgctcca |
22826064 |
T |
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| Q |
532 |
atgatggtgtcatttaggtggttgggctttcaaccttaatacgatcatgataatgctagtcacggctgatgatgt |
606 |
Q |
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| T |
22826063 |
atgatggtgtcatttaggtggttgggctttcaaccttaatacgatcatgataatgctagtcatggctgatgatgt |
22825989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 22826578 - 22826399
Alignment:
| Q |
1 |
aagacacgtccctgacctgcaaaagtaccaaaaaatt--acaaatccttttagagtaaagggggtcaaggactgtgcctaaagaatcagacagaagagtc |
98 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22826578 |
aagacacgtccctgacctgcaaaagtaccaaaaaaattaacaaatccttgtagagtaaagggggtcaaggactgtgcctaaagaatcagacagaagagtc |
22826479 |
T |
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| Q |
99 |
gttggatgtgcctccagcgggagagttgtatatataaggatcagggaaataaatataggaaacattatcattatttacac |
178 |
Q |
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| T |
22826478 |
gttggatgtgcctccagcgggagagttgtatatataaggatcagggaaataaatataggaaacattatcattatttacac |
22826399 |
T |
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