View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21080_low_6 (Length: 507)

Name: NF21080_low_6
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21080_low_6
NF21080_low_6
[»] chr8 (17 HSPs)
chr8 (19-507)||(37532576-37533070)
chr8 (19-507)||(41761799-41762290)
chr8 (19-190)||(41762393-41762564)
chr8 (27-161)||(37533221-37533355)
chr8 (15-60)||(33114233-33114278)
chr8 (19-60)||(7818474-7818515)
chr8 (19-60)||(11999125-11999166)
chr8 (19-60)||(16889195-16889236)
chr8 (27-60)||(30116041-30116074)
chr8 (19-60)||(35237259-35237300)
chr8 (19-60)||(39852154-39852195)
chr8 (19-60)||(43480616-43480657)
chr8 (19-60)||(44062641-44062682)
chr8 (19-56)||(32667532-32667569)
chr8 (27-60)||(36848242-36848275)
chr8 (27-60)||(43591015-43591048)
chr8 (27-59)||(35237909-35237941)
[»] chr7 (23 HSPs)
chr7 (19-507)||(43754433-43754925)
chr7 (170-504)||(48880171-48880510)
chr7 (19-190)||(43754159-43754330)
chr7 (19-134)||(48880993-48881108)
chr7 (21-117)||(48880076-48880172)
chr7 (19-58)||(42455921-42455960)
chr7 (22-60)||(4895127-4895165)
chr7 (22-60)||(19816937-19816975)
chr7 (19-61)||(27855566-27855608)
chr7 (19-60)||(85094-85135)
chr7 (19-60)||(36682835-36682876)
chr7 (19-59)||(34854042-34854082)
chr7 (126-161)||(48880686-48880721)
chr7 (27-60)||(19816272-19816305)
chr7 (27-60)||(24044088-24044121)
chr7 (22-59)||(33806613-33806650)
chr7 (27-60)||(34853399-34853432)
chr7 (27-60)||(36683509-36683542)
chr7 (27-60)||(42456561-42456594)
chr7 (19-60)||(45027000-45027041)
chr7 (19-56)||(46732567-46732604)
chr7 (19-60)||(47813971-47814012)
chr7 (145-177)||(48880630-48880662)
[»] chr3 (23 HSPs)
chr3 (370-437)||(40179866-40179933)
chr3 (13-76)||(53269377-53269440)
chr3 (19-60)||(3944895-3944936)
chr3 (19-60)||(23584928-23584969)
chr3 (19-60)||(23599751-23599792)
chr3 (19-76)||(49164681-49164738)
chr3 (19-57)||(49752973-49753011)
chr3 (19-60)||(25025174-25025215)
chr3 (19-76)||(31168552-31168609)
chr3 (19-60)||(44868007-44868048)
chr3 (19-51)||(37374820-37374852)
chr3 (19-63)||(41040571-41040615)
chr3 (12-51)||(24221235-24221274)
chr3 (19-58)||(42356233-42356272)
chr3 (27-61)||(41459138-41459172)
chr3 (27-60)||(25025809-25025842)
chr3 (19-60)||(32672166-32672207)
chr3 (19-60)||(37373965-37374006)
chr3 (19-60)||(38280303-38280344)
chr3 (27-60)||(44868663-44868696)
chr3 (19-52)||(50675178-50675211)
chr3 (19-60)||(50687753-50687794)
chr3 (27-60)||(55281843-55281876)
[»] chr6 (7 HSPs)
chr6 (19-112)||(32079019-32079113)
chr6 (19-60)||(13936685-13936726)
chr6 (19-60)||(33668221-33668262)
chr6 (27-59)||(5523208-5523240)
chr6 (19-59)||(5523892-5523932)
chr6 (20-51)||(12809756-12809787)
chr6 (19-60)||(30611390-30611431)
[»] chr5 (16 HSPs)
chr5 (19-60)||(4929551-4929592)
chr5 (19-60)||(3957500-3957541)
chr5 (19-58)||(26688096-26688135)
chr5 (19-58)||(26957827-26957866)
chr5 (18-60)||(8813728-8813770)
chr5 (19-60)||(39149476-39149517)
chr5 (27-60)||(21770002-21770035)
chr5 (19-60)||(25074283-25074324)
chr5 (19-60)||(25132252-25132293)
chr5 (27-60)||(26687508-26687541)
chr5 (27-60)||(26957239-26957272)
chr5 (19-60)||(28076014-28076055)
chr5 (19-60)||(33430043-33430084)
chr5 (19-59)||(6381575-6381615)
chr5 (28-60)||(25075042-25075074)
chr5 (28-60)||(25133011-25133043)
[»] chr4 (37 HSPs)
chr4 (19-60)||(12639965-12640006)
chr4 (19-60)||(31876788-31876829)
chr4 (14-60)||(18501734-18501780)
chr4 (19-60)||(199271-199312)
chr4 (19-60)||(388753-388794)
chr4 (19-60)||(2713888-2713929)
chr4 (19-60)||(20422776-20422817)
chr4 (19-59)||(52597757-52597797)
chr4 (19-61)||(40847677-40847719)
chr4 (19-60)||(25370437-25370478)
chr4 (19-60)||(33569720-33569761)
chr4 (19-60)||(35428245-35428286)
chr4 (27-60)||(36945268-36945301)
chr4 (19-60)||(37567519-37567560)
chr4 (19-60)||(52870161-52870202)
chr4 (19-56)||(55815825-55815862)
chr4 (27-63)||(26423767-26423803)
chr4 (20-60)||(26424449-26424489)
chr4 (19-59)||(33570322-33570362)
chr4 (27-60)||(199007-199040)
chr4 (27-60)||(389450-389483)
chr4 (27-60)||(20075533-20075566)
chr4 (27-60)||(20422139-20422172)
chr4 (27-56)||(25369791-25369820)
chr4 (19-60)||(33758132-33758173)
chr4 (27-60)||(35427254-35427287)
chr4 (27-60)||(36111261-36111294)
chr4 (19-60)||(36944610-36944651)
chr4 (20-73)||(43079973-43080026)
chr4 (26-59)||(45778733-45778766)
chr4 (18-51)||(47321758-47321791)
chr4 (19-60)||(48091140-48091181)
chr4 (27-60)||(52722117-52722150)
chr4 (27-60)||(55816495-55816528)
chr4 (19-47)||(32291015-32291043)
chr4 (20-60)||(32901852-32901892)
chr4 (19-59)||(39844896-39844936)
[»] chr1 (11 HSPs)
chr1 (19-60)||(8560156-8560197)
chr1 (19-60)||(49534441-49534482)
chr1 (19-60)||(1403040-1403081)
chr1 (19-60)||(6288249-6288290)
chr1 (19-56)||(27797785-27797822)
chr1 (21-60)||(27817049-27817088)
chr1 (27-60)||(8560787-8560820)
chr1 (19-60)||(29148940-29148981)
chr1 (19-60)||(42838937-42838978)
chr1 (27-60)||(42839709-42839742)
chr1 (19-55)||(37725370-37725406)
[»] chr2 (23 HSPs)
chr2 (22-60)||(8113345-8113383)
chr2 (19-60)||(4387005-4387046)
chr2 (19-60)||(9224266-9224307)
chr2 (19-60)||(20244216-20244257)
chr2 (19-59)||(28223788-28223828)
chr2 (19-53)||(8963504-8963538)
chr2 (19-61)||(12206788-12206830)
chr2 (19-60)||(7716671-7716712)
chr2 (19-60)||(16571118-16571159)
chr2 (24-61)||(16903133-16903170)
chr2 (19-60)||(33847873-33847914)
chr2 (19-59)||(44829324-44829364)
chr2 (19-61)||(11256784-11256826)
chr2 (27-60)||(6849296-6849329)
chr2 (19-60)||(6849587-6849628)
chr2 (19-56)||(7583842-7583879)
chr2 (27-60)||(10883295-10883328)
chr2 (27-60)||(16887591-16887624)
chr2 (19-60)||(18950540-18950581)
chr2 (19-60)||(27991383-27991424)
chr2 (19-60)||(28077916-28077957)
chr2 (27-60)||(28224433-28224466)
chr2 (19-60)||(43743847-43743888)
[»] scaffold0229 (1 HSPs)
scaffold0229 (19-60)||(15278-15319)
[»] scaffold0007 (1 HSPs)
scaffold0007 (19-60)||(11266-11306)
[»] scaffold0039 (1 HSPs)
scaffold0039 (19-59)||(90615-90655)
[»] scaffold0368 (1 HSPs)
scaffold0368 (19-60)||(11829-11870)


Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Original strand, 37532576 - 37533070
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatgaaacaattaatttttatggtgagattaaagaggaacactgatcttactatagtctaac 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37532576 ggtggcatttcacatgggaaaggttaatcctttcccaccatgaaacaattaatttttatggtgagattaaagaggaacactgatcttactatagtctaac 37532675  T
Q  119 cacactatattattttatttgtcttcaacctctcatccatgataacaacccaaagaattctttcaacttcactcaaaattcttcaaagtcactgaacttt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37532676 cacactatattattttatttgtcttcaacctctcatccatgataacaacccaaagaattctttcaacttcactcaaaattcttccaagtcactgaacttt 37532775  T
Q  219 tggtgcaacccag-nnnnnnnnntctcaatatgaggaatttgggtgcaaactaatttgaaacatcatgagaaggtgaagggagttttggtttctcagtgt 317  Q
    |||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37532776 tggtgcaacccagaaaaaaaaaatctcaatatgaggaatttgggtgcaaactaatttgaaacatcatgagaaggtgaagggagttttggtttctcagtgt 37532875  T
Q  318 aatggtgctga-----nnnnnnnnnnnnatgggttattttcatggtattttgttgctagaaatcactaagcttgaagaagaattgcatgtcgaaagttct 412  Q
    |||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37532876 aatggtgctgatttttttttttttttttatgggttattttcatggtattttgttgctagaaatcactaagcttgaagaagaattgcatgtcgaaagttct 37532975  T
Q  413 atctttgtctttgcaactttagttagtcgcaaaattaaaacccaatagattccatcattataatctcgcataaaattcaaatgggttcattgttt 507  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37532976 atctttgtctttgcaactttagttagttgcaaaattaaaacccaatagattccatcattataatctcgcataaaattcaaatgggttcattgttt 37533070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Original strand, 41761799 - 41762290
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatgaaacaattaatttttatggtgagattaaagaggaacactgatcttactatagtctaac 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41761799 ggtggcatttcacatgggaaaggttaatcctttcccaccatgggacagttaatttttatggtgagattaaagaggaacactgatcttactatagtctaac 41761898  T
Q  119 cacactatattattttatttgtcttcaacctctcatccatgataacaacccaaagaattctttcaacttcac---tcaaaattcttcaaagtcactgaac 215  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||||||||||||||||||||||    
T  41761899 cacactatattattttacttgtcttcaacctctcatccatgataacaacccaaagaattcttccaacttcaccaatcaaaattcttcaaagtcactgaac 41761998  T
Q  216 ttttggtgcaacccagnnnnnnnnntctcaatatgaggaatttgggtgcaaactaatttgaaacatcatgagaaggtgaagggagttttggtttctcagt 315  Q
    ||||||||||||||||         ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  41761999 ttttggtgcaacccagaaaataaaatctcaatatgaggaatttgggtgcaaactaattcgaaacatcatgagaaggtgaagggagttttggtttctc--t 41762096  T
Q  316 gtaatggtgctg--annnnnnnnnnnnatgggttattttcatggtattttgttgctagaaatcactaagcttgaagaagaattgcatgtcgaaagttcta 413  Q
    ||||||||||||  |            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  41762097 gtaatggtgctgaaattttatttttttatgggttattttcatggtattttgttgctagaaatcactaagcttgaagaagaattgcatgtcgaaggttata 41762196  T
Q  414 tctttgtctttgcaactttagttagtcgcaaaattaaaacccaatagattccatcattataatctcgcataaaattcaaatgggttcattgttt 507  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41762197 tctttgtctttgcaactttagttagttgcaaaattaaaacccaatagattccatcattataatctcgcataaaattcaaatgggtttattgttt 41762290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 41762564 - 41762393
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatgaaacaattaatttttatggtgagattaaagaggaacactgatcttactatagtctaac 118  Q
    |||||||||||||||||||||| |||||| ||| ||||||||  ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41762564 ggtggcatttcacatgggaaagtttaatcttttcccaccatgggacagttaatttttatggtgagattaaagaggaacactgattttactatagtctaac 41762465  T
Q  119 cacactatattattttatttgtcttcaacctctcatccatgataacaacccaaagaattctttcaacttcac 190  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  41762464 tacactatattattttacttgtcttcaacctctcatccatgataacaacctaaagaattcttccaacctcac 41762393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 37533355 - 37533221
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatgaaacaattaatttttatggtgagattaaagaggaacactgatcttactatagtctaaccacactat 126  Q
    ||||||||||||||||||||||||| |||||||   |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||    
T  37533355 ttcacatgggaaaggttaatcctttcccaccataggacaattaatttttatggtgagattaaagaggaacactgattttactatagtttaactacactat 37533256  T
Q  127 attattttatttgtcttcaacctctcatccatgat 161  Q
    ||||||||| |||||||||||||||||||||||||    
T  37533255 attattttagttgtcttcaacctctcatccatgat 37533221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 33114278 - 33114233
Alignment:
Q  15 tttcggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  33114278 tttcggtggcatttcacatgggaaaggttaatcctttcccaccatg 33114233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 7818474 - 7818515
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  7818474 ggtggcatttcacatgggaaaggttaatcctttcccaccatg 7818515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 11999166 - 11999125
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  11999166 ggtggcatttcacatgggaaaggttaatcatttcccaccatg 11999125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 16889195 - 16889236
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  16889195 ggtggcatttcacatgggaaaggttaatcttttcccaccatg 16889236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 30116074 - 30116041
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||||    
T  30116074 ttcacatgggaaaggttaatccttttccaccatg 30116041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 35237259 - 35237300
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||| |||||||||||||||||||||||||||| ||||||||    
T  35237259 ggtgacatttcacatgggaaaggttaatcctttcccaccatg 35237300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 39852154 - 39852195
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  39852154 ggtggcatttcaaatgggaaaggttaatcctttcccaccatg 39852195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 43480616 - 43480657
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||| |||| |||||||    
T  43480616 ggtggcatttcacatgggaaaggttaatctttttacaccatg 43480657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 44062682 - 44062641
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  44062682 ggtggcatttcatataggaaaggttaatccttttccaccatg 44062641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 32667569 - 32667532
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccac 56  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  32667569 ggtggcattttacatgggaaaggttaatcctttcccac 32667532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 36848275 - 36848242
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||| |||||||||||||||||||    
T  36848275 ttcacatgggaaagcttaatccttttccaccatg 36848242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 43591015 - 43591048
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  43591015 ttcacatgggaaaggttaatcctttcccaccatg 43591048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 35237941 - 35237909
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccat 59  Q
    ||||||||||||||||||||||||| |||||||    
T  35237941 ttcacatgggaaaggttaatcctttcccaccat 35237909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Complemental strand, 43754925 - 43754433
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatgaaacaattaatttttatggtgagattaaagaggaacactgatcttactatagtctaac 118  Q
    ||||||||||||||||  ||||||||||| ||| ||||||||  ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43754925 ggtggcatttcacatgaaaaaggttaatcttttcccaccatgggacagttaatttttatggtgagattaaagaggaacactgatcttac-atagtctaac 43754827  T
Q  119 cacactatattattttatttgtcttcaacctctcatccatgataacaacccaaagaattctttcaacttcac---tcaaaattcttcaaagtcactgaac 215  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||||||||||||||||||||||    
T  43754826 cacactatattattttacttgtcttcaacctctcatccatgataacaacccaaagaattcttccaacttcaccaatcaaaattcttcaaagtcactgaac 43754727  T
Q  216 ttttggtgcaacccagnnnnnnnnntctcaatatgaggaatttgggtgcaaactaatttgaaacatcatgagaaggtgaagggagttttggtttctcagt 315  Q
    ||||||||||||||||         ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||    
T  43754726 ttttggtgcaacccagaaaataaaatctcaatatgaggaatttgggtgcaaactaattcgaaacatcatgagaaggtgaagggagttttggtttctttgt 43754627  T
Q  316 gtaatggtgctg--annnnnnnnnnnnatgggttattttcatggtattttgttgctagaaatcactaagcttgaagaagaattgcatgtcgaaagttcta 413  Q
    ||||||||||||  |            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43754626 gtaatggtgctgaaattttatttttttatgggttattttcatggtattttgttgctagaaatcactaagcttgaagaagaattgcatgtcgaatgttcta 43754527  T
Q  414 tctttgtctttgcaactttagttagtcgcaaaattaaaacccaatagattccatcattataatctcgcataaaattcaaatgggttcattgttt 507  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43754526 tctttgtctttgcaactttagttagttgcaaaattaaaacccaatagattccatcattataatctcgcataaaattcaaatgggtttattgttt 43754433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 170 - 504
Target Start/End: Original strand, 48880171 - 48880510
Alignment:
Q  170 aaagaattctttcaacttcactcaaaattcttcaaagtcactgaacttttggtgcaacccagnnnnnnnnn---tctcaatatgaggaatttgggtgcaa 266  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||            ||||||||||||||||||||||||||    
T  48880171 aaagaattcttccaacttcactcaaaattcttcaaagtcacttagcttttggtgcaacccagaaaaaaaaaaaatctcaatatgaggaatttgggtgcaa 48880270  T
Q  267 actaatttgaaacatcatgagaaggtgaagggagttttggtttctcagtgtaatggtgctgannnnnnnnnnnn--atgggttattttcatggtattttg 364  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||              ||||||||||||||||||||||||    
T  48880271 actaattcgaaacatcatgagaaggtgaagggagttttggtttctttgtgtaatggtgctgaaattttatttttttatgggttattttcatggtattttg 48880370  T
Q  365 ttgctagaaatcactaagcttgaagaagaattgcatgtcgaaagttctatctttgtctttgcaactttagttagtcgcaaaattaaaacccaatagattc 464  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48880371 ttgctagaaatcactaagcttgaagaagaattgcatgtcgaatgttctatctttgtctttgcaactttagttagttgcaaaattaaaacccaatagattc 48880470  T
Q  465 catcattataatctcgcataaaattcaaatgggttcattg 504  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48880471 catcattataatctcgcataaaattcaaatgggttcattg 48880510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 43754159 - 43754330
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatgaaacaattaatttttatggtgagattaaagaggaacactgatcttactatagtctaac 118  Q
    ||||||||||||||| | |||| |||||| ||||||| ||||  ||| |||||||||||| ||||||||||||||||||||||| |||||||||| ||||    
T  43754159 ggtggcatttcacatcgaaaagtttaatctttttccagcatgggacagttaatttttatgatgagattaaagaggaacactgattttactatagtataac 43754258  T
Q  119 cacactatattattttatttgtcttcaacctctcatccatgataacaacccaaagaattctttcaacttcac 190  Q
     | |||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||| |||| ||||    
T  43754259 tatactatattattttacttgtcttcaacctctcatccatgataacaacataaagaattcttccaacctcac 43754330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 48881108 - 48880993
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatgaaacaattaatttttatggtgagattaaagaggaacactgatcttactatagtctaac 118  Q
    |||||||||| |||||| ||||||||||||||| |||||||   ||| |||||||||||||||  |||||| |||||||||||| |||||||| ||||||    
T  48881108 ggtggcattttacatggaaaaggttaatcctttcccaccataggacagttaatttttatggtggaattaaaaaggaacactgattttactataatctaac 48881009  T
Q  119 cacactatattatttt 134  Q
     |||||||||||||||    
T  48881008 tacactatattatttt 48880993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 48880076 - 48880172
Alignment:
Q  21 tggcatttcacatgggaaaggttaatccttttccaccatgaaacaattaatttttatggtgagattaaagaggaacactgatcttactatagtctaa 117  Q
    ||||||||||||| |||||| | |||| ||||||| ||||  ||| |||||||||||||||||| |||||||||||| |||||||| ||||| ||||    
T  48880076 tggcatttcacataggaaagatgaatcattttccatcatgggacagttaatttttatggtgagactaaagaggaacattgatcttaatatagactaa 48880172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 42455921 - 42455960
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccacca 58  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  42455921 ggtggcatttcacatgggaaaggttaatcctttcccacca 42455960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 4895165 - 4895127
Alignment:
Q  22 ggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  4895165 ggcatttcacatgggaaaggttaatcattttccaccatg 4895127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 19816975 - 19816937
Alignment:
Q  22 ggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  19816975 ggcatttcatatgggaaaggttaatccttttccaccatg 19816937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 27855566 - 27855608
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatga 61  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  27855566 ggtggcatttcacatgggaaaggttaatcatttcccaccatga 27855608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 85135 - 85094
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  85135 ggtggcatttcacatgggaaaggtgaatcctttcccaccatg 85094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 36682835 - 36682876
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  36682835 ggtggcatttcacatgggaaaggttaatcatttcccaccatg 36682876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 34854082 - 34854042
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccat 59  Q
    |||| |||||||||||||||||||||||||||| |||||||    
T  34854082 ggtgccatttcacatgggaaaggttaatcctttcccaccat 34854042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 48880721 - 48880686
Alignment:
Q  126 tattattttatttgtcttcaacctctcatccatgat 161  Q
    |||||||||| |||||||||||||||||||||||||    
T  48880721 tattattttacttgtcttcaacctctcatccatgat 48880686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 19816272 - 19816305
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  19816272 ttcacatgggaaaggttaatcctttcccaccatg 19816305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 24044121 - 24044088
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  24044121 ttcacatgggaaaggttaatcctttcccaccatg 24044088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 33806650 - 33806613
Alignment:
Q  22 ggcatttcacatgggaaaggttaatccttttccaccat 59  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  33806650 ggcatttcacatgggaaaggtcaatcctttcccaccat 33806613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 34853399 - 34853432
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  34853399 ttcacatgggaaaggttaatcctttcccaccatg 34853432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 36683542 - 36683509
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  36683542 ttcacatgggaaaggttaatcctttcccaccatg 36683509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 42456594 - 42456561
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  42456594 ttcacatgggaaaggttaatcctttcccaccatg 42456561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 45027041 - 45027000
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||| ||||||||||||||||||| |||||||||||| ||||    
T  45027041 ggtgccatttcacatgggaaaggtcaatccttttccatcatg 45027000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 46732567 - 46732604
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccac 56  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  46732567 ggtggcatttcacatgggaaaggttaattctttcccac 46732604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 47813971 - 47814012
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||  ||||||||||||||||||| ||||||||    
T  47813971 ggtggcatttcatgtgggaaaggttaatcctttcccaccatg 47814012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 48880662 - 48880630
Alignment:
Q  145 aacctctcatccatgataacaacccaaagaatt 177  Q
    |||||||||||||||||||||||| ||||||||    
T  48880662 aacctctcatccatgataacaacctaaagaatt 48880630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 370 - 437
Target Start/End: Complemental strand, 40179933 - 40179866
Alignment:
Q  370 agaaatcactaagcttgaagaagaattgcatgtcgaaagttctatctttgtctttgcaactttagtta 437  Q
    |||||||||| |||||||||||||||||||||  ||| ||||| ||||||||||||||||||||||||    
T  40179933 agaaatcactgagcttgaagaagaattgcatggtgaaggttctttctttgtctttgcaactttagtta 40179866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 53269440 - 53269377
Alignment:
Q  13 agtttcggtggcatttcacatgggaaaggttaatccttttccaccatgaaacaattaattttta 76  Q
    ||||| |||| |||||||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  53269440 agtttaggtgacatttcacatgggaaaggttaatcctttcccaccatggaacacttaattttta 53269377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 3944895 - 3944936
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  3944895 ggtggcatttcacatgggaaaggttaatcctttcccaccatg 3944936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 23584969 - 23584928
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  23584969 ggtggcatttcacatgggaaaggttaatcctttcccaccatg 23584928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 23599792 - 23599751
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  23599792 ggtggcatttcacatgggaaaggttaatcctttcccaccatg 23599751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 49164738 - 49164681
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatgaaacaattaattttta 76  Q
    |||||||||||||||||||||||||||||||||| ||| |||  ||| ||||||||||    
T  49164738 ggtggcatttcacatgggaaaggttaatcctttttcactatgggacacttaattttta 49164681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 49753011 - 49752973
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccacc 57  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  49753011 ggtggcatttcacatgggaaaggttaatcctttcccacc 49752973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 25025174 - 25025215
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  25025174 ggtggcatttcacatgggaaaggttaatcctttcccatcatg 25025215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 31168609 - 31168552
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatgaaacaattaattttta 76  Q
    |||| ||||| ||||||||||||||||||||||||||||||   ||| ||||||||||    
T  31168609 ggtgacattttacatgggaaaggttaatccttttccaccataggacatttaattttta 31168552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 44868007 - 44868048
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||| ||||||||||||| ||||||||||||    
T  44868007 ggtggcatttcacataggaaaggttaatcattttccaccatg 44868048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 37374820 - 37374852
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttt 51  Q
    |||||||||||||||||||||||||||||||||    
T  37374820 ggtggcatttcacatgggaaaggttaatccttt 37374852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 41040571 - 41040615
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatgaaa 63  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||    
T  41040571 ggtggcatttcacatgggaaaggtgaatcctttctcaccatgaaa 41040615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 24221274 - 24221235
Alignment:
Q  12 aagtttcggtggcatttcacatgggaaaggttaatccttt 51  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  24221274 aagttacggtgacatttcacatgggaaaggttaatccttt 24221235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 42356233 - 42356272
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccacca 58  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  42356233 ggtggcatttcacatgggaaaggtcaatcctttcccacca 42356272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 41459138 - 41459172
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatga 61  Q
    ||||||||||||||||||||||||| |||||||||    
T  41459138 ttcacatgggaaaggttaatcctttcccaccatga 41459172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 25025842 - 25025809
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  25025842 ttcacatgggaaaggttaatcctttcccaccatg 25025809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 32672166 - 32672207
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||| |||||||||||||||||||||| ||| ||||    
T  32672166 ggtggcattttacatgggaaaggttaatcctttcccaacatg 32672207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 37373965 - 37374006
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||| |||||||||||||||||| ||| ||||||||    
T  37373965 ggtggcattttacatgggaaaggttaatcttttcccaccatg 37374006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 38280344 - 38280303
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||||  |||||||| ||||||||    
T  38280344 ggtggcatttcacatgggaaaggccaatcctttcccaccatg 38280303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 44868696 - 44868663
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  44868696 ttcacatgggaaaggttaatcctttcccaccatg 44868663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 50675211 - 50675178
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatcctttt 52  Q
    |||| |||||||||||||||||||||||||||||    
T  50675211 ggtgacatttcacatgggaaaggttaatcctttt 50675178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 50687794 - 50687753
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||| ||||||||||||||||||||||| |||| ||||||||    
T  50687794 ggtgacatttcacatgggaaaggttaattctttcccaccatg 50687753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 55281843 - 55281876
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  55281843 ttcacatgggaaaggttaatcctttcccaccatg 55281876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 32079019 - 32079113
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatgaaacaattaattttt-atggtgagattaaagaggaacactgatcttactatag 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | ||  ||||| |   | ||||||||  |||||||||||||||||||||    
T  32079019 ggtggcatttcacatgggaaaggtgaatccttttccaccatgaaaaactttttttttaaccatcagattaaaagggaacactgatcttactatag 32079113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 13936726 - 13936685
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||| |||||||||||||||||||||||||||| ||||||||    
T  13936726 ggtgccatttcacatgggaaaggttaatcctttcccaccatg 13936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 33668221 - 33668262
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  33668221 ggtggcatttcacatgggaaaggttaatcatttcccaccatg 33668262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 5523208 - 5523240
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccat 59  Q
    |||||||||||||||||||||||||||||||||    
T  5523208 ttcacatgggaaaggttaatccttttccaccat 5523240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 5523932 - 5523892
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccat 59  Q
    ||||||||||||||||||||||||||||| ||| |||||||    
T  5523932 ggtggcatttcacatgggaaaggttaatcttttcccaccat 5523892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 12809787 - 12809756
Alignment:
Q  20 gtggcatttcacatgggaaaggttaatccttt 51  Q
    ||||||||||||||||||||||||||||||||    
T  12809787 gtggcatttcacatgggaaaggttaatccttt 12809756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 30611431 - 30611390
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||| |||| ||||||||||| ||||||||    
T  30611431 ggtggcatttcacatgagaaatgttaatcctttcccaccatg 30611390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 4929592 - 4929551
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4929592 ggtggcatttcacatgggaaaggttaatccttttccaccatg 4929551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 3957500 - 3957541
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  3957500 ggtggcatttcacatgggaaaggttaatcctttcccaccatg 3957541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 26688135 - 26688096
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccacca 58  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  26688135 ggtggcatttcacatgggaaaggttaatcctttcccacca 26688096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 26957866 - 26957827
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccacca 58  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  26957866 ggtggcatttcacatgggaaaggttaatcctttcccacca 26957827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 8813770 - 8813728
Alignment:
Q  18 cggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  8813770 cggtggcatttcatatgggaaaggttaatccttttccatcatg 8813728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 39149517 - 39149476
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  39149517 ggtggcatttcacatgggaaaggtgaatcctttcccaccatg 39149476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 21770002 - 21770035
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||| |||||||||||||||||||||||||||||    
T  21770002 ttcatatgggaaaggttaatccttttccaccatg 21770035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 25074283 - 25074324
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||| || |||||||| ||||||||||||    
T  25074283 ggtggcatttcacatggaaatggttaatctttttccaccatg 25074324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 25132252 - 25132293
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||| || |||||||| ||||||||||||    
T  25132252 ggtggcatttcacatggaaatggttaatctttttccaccatg 25132293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 26687508 - 26687541
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||| ||||||    
T  26687508 ttcacatgggaaaggttaatccttttctaccatg 26687541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 26957239 - 26957272
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||| ||||||    
T  26957239 ttcacatgggaaaggttaatccttttctaccatg 26957272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 28076055 - 28076014
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||| |||||||||||| ||||||||||| ||||||||||||    
T  28076055 ggtgacatttcacatggaaaaggttaatcattttccaccatg 28076014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 33430043 - 33430084
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||| ||||||||||||||| | ||||||    
T  33430043 ggtggcatttcacatggaaaaggttaatcctttcctaccatg 33430084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 6381615 - 6381575
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccat 59  Q
    ||||||||||||||||||||||| |||  ||||||||||||    
T  6381615 ggtggcatttcacatgggaaaggataaaacttttccaccat 6381575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 25075074 - 25075042
Alignment:
Q  28 tcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||||| ||||||||    
T  25075074 tcacatgggaaaggttaatcctttcccaccatg 25075042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 25133043 - 25133011
Alignment:
Q  28 tcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||||| ||||||||    
T  25133043 tcacatgggaaaggttaatcctttcccaccatg 25133011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 12639965 - 12640006
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12639965 ggtggcatttcacatgggaaaggttaatccttttccaccatg 12640006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 31876788 - 31876829
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31876788 ggtggcatttcacatgggaaaggttaatccttttccaccatg 31876829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 18501734 - 18501780
Alignment:
Q  14 gtttcggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||    
T  18501734 gtttaggtggcatttcacatgggaaaggttaatcctttcccaccatg 18501780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 199312 - 199271
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  199312 ggtggcatttcacatgggaaaggttaatcctttcccaccatg 199271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 388753 - 388794
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  388753 ggtggcatttcacatgggaaaggttaatcctttcccaccatg 388794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 2713929 - 2713888
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  2713929 ggtggcatttcacatgggaaaggttaatcctttcccaccatg 2713888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 20422817 - 20422776
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  20422817 ggtggcatttcacatgggaaagcttaatccttttccaccatg 20422776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 52597797 - 52597757
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccat 59  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  52597797 ggtggcatttcacatgggaaaggttaatcctttttcaccat 52597757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 40847677 - 40847719
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatga 61  Q
    ||||||||||||||||| ||||||||||||||| |||||||||    
T  40847677 ggtggcatttcacatggaaaaggttaatcctttcccaccatga 40847719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 25370478 - 25370437
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  25370478 ggtggcattttacatgggaaaggttaatcctttcccaccatg 25370437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 33569720 - 33569761
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  33569720 ggtggcatttcacatgggaaaggtcaatcctttcccaccatg 33569761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 35428286 - 35428245
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  35428286 ggtggcatttcagatgggaaaggttaatcctttcccaccatg 35428245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 36945301 - 36945268
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||||    
T  36945301 ttcacatgggaaaggttaatccttttccaccatg 36945268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 37567560 - 37567519
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  37567560 ggtgtcatttcacatgggaaaggttaatacttttccaccatg 37567519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 52870202 - 52870161
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  52870202 ggtggcatttcacatgggaaaggtgaatccttttccatcatg 52870161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 55815825 - 55815862
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccac 56  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  55815825 ggtggcatttcacatgggaaaggttaatcctttcccac 55815862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 26423767 - 26423803
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatgaaa 63  Q
    ||||||||||||||||||||||||| |||||||||||    
T  26423767 ttcacatgggaaaggttaatcctttcccaccatgaaa 26423803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 26424489 - 26424449
Alignment:
Q  20 gtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| | |||||||||||||    
T  26424489 gtggcatttcacatgggaaaggttagttcttttccaccatg 26424449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 33570362 - 33570322
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccat 59  Q
    ||||||||||||||||| |||||| ||||||||||||||||    
T  33570362 ggtggcatttcacatggaaaaggtcaatccttttccaccat 33570322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 199007 - 199040
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  199007 ttcacatgggaaaggttaatcctttcccaccatg 199040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 389483 - 389450
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  389483 ttcacatgggaaaggttaatcctttcccaccatg 389450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 20075533 - 20075566
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  20075533 ttcacatgggaaaggttaatcctttcccaccatg 20075566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 20422139 - 20422172
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  20422139 ttcacatgggaaaggttaatcctttcccaccatg 20422172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 25369791 - 25369820
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccac 56  Q
    ||||||||||||||||||||||||||||||    
T  25369791 ttcacatgggaaaggttaatccttttccac 25369820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 33758173 - 33758132
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||| ||||||||||||||||||| |||||||| ||||||||    
T  33758173 ggtgtcatttcacatgggaaaggtcaatcctttcccaccatg 33758132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 35427254 - 35427287
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||||||||| |||||    
T  35427254 ttcacatgggaaaggttaatccttttccgccatg 35427287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 36111294 - 36111261
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  36111294 ttcacatgggaaaggttaatcctttcccaccatg 36111261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 36944610 - 36944651
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||| | |||||||||||| ||||||||||||    
T  36944610 ggtggcatttcacacgtgaaaggttaatctttttccaccatg 36944651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 43080026 - 43079973
Alignment:
Q  20 gtggcatttcacatgggaaaggttaatccttttccaccatgaaacaattaattt 73  Q
    ||||||||||||||||||||||  |||||||||| |||||| || | |||||||    
T  43080026 gtggcatttcacatgggaaaggacaatccttttctaccatggaaaagttaattt 43079973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 45778766 - 45778733
Alignment:
Q  26 tttcacatgggaaaggttaatccttttccaccat 59  Q
    |||||||||||||||||||||||||| |||||||    
T  45778766 tttcacatgggaaaggttaatcctttcccaccat 45778733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 47321758 - 47321791
Alignment:
Q  18 cggtggcatttcacatgggaaaggttaatccttt 51  Q
    ||||||||||||| ||||||||||||||||||||    
T  47321758 cggtggcatttcatatgggaaaggttaatccttt 47321791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 48091181 - 48091140
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||| |||||||||||||||| ||| ||||||||    
T  48091181 ggtggcatttcatatgggaaaggttaatcttttcccaccatg 48091140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 52722150 - 52722117
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||| ||||    
T  52722150 ttcacatgggaaaggttaatccttttccatcatg 52722117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 55816528 - 55816495
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  55816528 ttcacatgggaaaggttaatcctttcccaccatg 55816495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 32291015 - 32291043
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatc 47  Q
    |||||||||||||||||||||||||||||    
T  32291015 ggtggcatttcacatgggaaaggttaatc 32291043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 32901852 - 32901892
Alignment:
Q  20 gtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||| | | ||||||||||||||||    
T  32901852 gtggcatttcacatgggaaaagattatccttttccaccatg 32901892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 39844896 - 39844936
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccat 59  Q
    |||||||||||||||||||||||  |||||||| |||||||    
T  39844896 ggtggcatttcacatgggaaaggggaatcctttcccaccat 39844936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 8560156 - 8560197
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8560156 ggtggcatttcacatgggaaaggttaatccttttccaccatg 8560197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 49534482 - 49534441
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  49534482 ggtggcatttcacatgggaaaggttaatcctttcccaccatg 49534441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 1403040 - 1403081
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  1403040 ggtggcatttcacatggaaaaggttaatcctttcccaccatg 1403081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 6288290 - 6288249
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  6288290 ggtggcatttcacatgggaaaggttaatcctttctcaccatg 6288249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 27797822 - 27797785
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccac 56  Q
    |||| |||||||||||||||||||||||||||||||||    
T  27797822 ggtgccatttcacatgggaaaggttaatccttttccac 27797785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 27817088 - 27817049
Alignment:
Q  21 tggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  27817088 tggcatttcacatgggtaaggttaatcctttcccaccatg 27817049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 8560820 - 8560787
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  8560820 ttcacatgggaaaggttaatcctttcccaccatg 8560787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 29148940 - 29148981
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||| ||| |||||||||||||||||| ||||||||    
T  29148940 ggtggcatttaacacgggaaaggttaatcctttcccaccatg 29148981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 42838937 - 42838978
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||| |||||||||||| ||||||||||||||| ||||||||    
T  42838937 ggtgccatttcacatggtaaaggttaatcctttcccaccatg 42838978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 42839709 - 42839742
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  42839709 ttcacatgggaaaggttaatcctttcccaccatg 42839742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 37725370 - 37725406
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttcca 55  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  37725370 ggtggtattttacatgggaaaggttaatccttttcca 37725406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 8113383 - 8113345
Alignment:
Q  22 ggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8113383 ggcatttcacatgggaaaggttaatccttttccaccatg 8113345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 4387046 - 4387005
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  4387046 ggtggcatttcacatgggaaaggttaatcctttcccaccatg 4387005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 9224266 - 9224307
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  9224266 ggtggcatttcacatgggaaaggttaatcctttcccaccatg 9224307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 20244257 - 20244216
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  20244257 ggtggcatttcacatgggaaaggttaatcctttcccaccatg 20244216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 28223788 - 28223828
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccat 59  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  28223788 ggtggcatttcacatgggaaaggttaatcctttcccaccat 28223828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 8963504 - 8963538
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttc 53  Q
    |||||||||||||||||||||||||||||||||||    
T  8963504 ggtggcatttcacatgggaaaggttaatccttttc 8963538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 12206788 - 12206830
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatga 61  Q
    |||| |||||||||||||||||||||||||||| |||||||||    
T  12206788 ggtgacatttcacatgggaaaggttaatcctttcccaccatga 12206830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 7716671 - 7716712
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  7716671 ggtggcatttcacatgggaaatgttaatcctttcccaccatg 7716712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 16571118 - 16571159
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||| |||||||||||||||||||||||||||| ||||||||    
T  16571118 ggtgccatttcacatgggaaaggttaatcctttcccaccatg 16571159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 16903170 - 16903133
Alignment:
Q  24 catttcacatgggaaaggttaatccttttccaccatga 61  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  16903170 cattttacatgggaaaggttaatccttttccaccatga 16903133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 33847873 - 33847914
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  33847873 ggtggcatttcacatgggaaaggccaatccttttccaccatg 33847914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 44829364 - 44829324
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccat 59  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  44829364 ggtggcatttcacatgggaatggtgaatccttttccaccat 44829324  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 11256826 - 11256784
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatga 61  Q
    |||||||||| |||||| ||||||||||| |||||||||||||    
T  11256826 ggtggcattttacatggaaaaggttaatcattttccaccatga 11256784  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 6849296 - 6849329
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  6849296 ttcacatgggaaaggttaatcctttcccaccatg 6849329  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 6849628 - 6849587
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||| |||||| ||||||||||||||| ||||||||    
T  6849628 ggtggcattttacatggaaaaggttaatcctttcccaccatg 6849587  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 7583879 - 7583842
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccac 56  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  7583879 ggtggcatttcacatgggaaaggttaatcttttcccac 7583842  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 10883295 - 10883328
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  10883295 ttcacatgggaaaggttaatcctttcccaccatg 10883328  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 16887591 - 16887624
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  16887591 ttcacatgggaaaggttaatcctttcccaccatg 16887624  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 18950581 - 18950540
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||| |||| ||||||||||||||| ||||||||    
T  18950581 ggtggcatttcatatggaaaaggttaatcctttcccaccatg 18950540  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 27991424 - 27991383
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||  ||||||||||| ||||||||||||||||||    
T  27991424 ggtggcatttatcatgggaaaggctaatccttttccaccatg 27991383  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 28077957 - 28077916
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||  ||||||||||| ||||||||||||||||||    
T  28077957 ggtggcatttatcatgggaaaggctaatccttttccaccatg 28077916  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 28224466 - 28224433
Alignment:
Q  27 ttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  28224466 ttcacatgggaaaggttaatcctttcccaccatg 28224433  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 43743888 - 43743847
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||| ||||||||||||||||||| |||||||| ||||||||    
T  43743888 ggtgacatttcacatgggaaaggtgaatcctttcccaccatg 43743847  T

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Target: scaffold0229 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 15319 - 15278
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  15319 ggtggcatttcacatggaaaaggttaatcctttcccaccatg 15278  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 11266 - 11306
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  11266 ggtggcatttcacatgggaaaggttaat-cttttccaccatg 11306  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 90615 - 90655
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccat 59  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  90615 ggtggcatttcacatgggaaaggtgaatcattttccaccat 90655  T

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Target: scaffold0368 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 11870 - 11829
Alignment:
Q  19 ggtggcatttcacatgggaaaggttaatccttttccaccatg 60  Q
    |||| |||||||||||| ||||||||||||||| ||||||||    
T  11870 ggtgccatttcacatggtaaaggttaatcctttcccaccatg 11829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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