View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21080_low_7 (Length: 469)
Name: NF21080_low_7
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 453
Target Start/End: Original strand, 2905709 - 2906142
Alignment:
| Q |
14 |
aggacgtatcgttttgaagaactcaagttcattttttggatggaacaactctactttttcatggcgttcaggtttgtgactacttgtgtttgttgaaatg |
113 |
Q |
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| T |
2905709 |
aggacgtatcgttttgaagaacccaagttcattttttggatggaacaactctactttttcatggcgttcaggtttgtgacaacttgtgtttgttgaaatg |
2905808 |
T |
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| Q |
114 |
atgatgattgttgcctccttctgtatttaactattcaggaggacgaggccctatttgaactagtaaaaagtatggtatcaagagattgtcttttattgcg |
213 |
Q |
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| T |
2905809 |
atgatgattgttgcctccttctgtatttaactactcaggaggacgaggccctatttgaactagtaaaaagtatggtatcaagagattgtcttttattgcg |
2905908 |
T |
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| Q |
214 |
aaatccatgccaggtcgtattggaaagcaatgtcgagagaggtaagca--ataatagatgttagtaagtgcccgagacgaaagcattttgtgtgttcata |
311 |
Q |
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| T |
2905909 |
aaatccatgccaggtcgtattggaaagcaatgtcgagagaggtaagcaatataatagatgttagtaagtgcctgagacgaaagcattttgtgtgttcata |
2906008 |
T |
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| Q |
312 |
ttttattctttttgatgtattgctattcttttgcaaatgacaacttttgtgtgcaaataaacaatttgacgtagccttttgctgttggatgctaaattga |
411 |
Q |
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| T |
2906009 |
ttttattctttttgatgtattgctattcttttgcagatgacaacttttgtgtgcaaataaacaatttgacgtagcc--------ttggatgctaaattga |
2906100 |
T |
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| Q |
412 |
tcannnnnnnattaaatgtattgactttttaaagaatatact |
453 |
Q |
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| T |
2906101 |
tcatttttttattaaatgtattgactttttaaagaatatact |
2906142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 98 - 276
Target Start/End: Original strand, 2900945 - 2901127
Alignment:
| Q |
98 |
tgtgtttgttgaaatgatgatg---attgttgcctccttctgtatttaactattcaggaggacgaggccctatttgaactagtaa-aaagtatggtatca |
193 |
Q |
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|||||| ||||||||||||||| ||| ||| ||||| | | ||||||| ||||||||||| |||||| | |||| ||||||| |||||||||| ||| |
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| T |
2900945 |
tgtgttggttgaaatgatgatggtgatttttgtctcctaccgcatttaacgattcaggaggatgaggccttgattgagctagtaagaaagtatggtttca |
2901044 |
T |
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| Q |
194 |
agagattgtcttttattgcgaaatccatgccaggtcgtattggaaagcaatgtcgagagaggtaagcaataatagatgttagt |
276 |
Q |
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| T |
2901045 |
agagatggtcttttatagcaaaatccatgccaggtcgtatcggaaagcaatgtcgtgagaggtaggcagtaatagatgttagt |
2901127 |
T |
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