View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21080_low_9 (Length: 454)
Name: NF21080_low_9
Description: NF21080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21080_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 2 - 440
Target Start/End: Original strand, 44690956 - 44691408
Alignment:
| Q |
2 |
gaccaaaa-catgtattaagcctaaatatataatagtatatat------ctatgtcaatggaatatcatgaataccatgtctctgtttgtattcttatca |
94 |
Q |
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| T |
44690956 |
gaccaaaagcatgtattaagcctaaatatataatagtatatatatatatctatgtcaatggaatatcatgaataccatgtcttt--ttgtattcttatca |
44691053 |
T |
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| Q |
95 |
ctgttgagctacttagcttatacgtcaagttaacttggaagaaacaac---------ccatgcaccttttttgttcaaatcctgtgtttagttttaggta |
185 |
Q |
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| T |
44691054 |
ctgttgagctacttagcttatacgtcaagttaacttggaagaaacaactcttccaacccatgcaccttttctgttcaaatcctgtgtttagttttaggta |
44691153 |
T |
|
| Q |
186 |
ataataccttgggatgattataaggtctgtttgtttggaggatttttgaggcgaggtctaagttgaaannnnnnnaaaattaaaaaacatgataaataat |
285 |
Q |
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| T |
44691154 |
ctaataccttgggatgattataaggtctgtttgtttggaggatttttgaggcgaggtctaagttgaaattttttcaaaattaaaaaacatgataaataat |
44691253 |
T |
|
| Q |
286 |
catatagtagagatttccaagatttgtattggtatggaaaattgatctgtctcatgtagaggactattttgtgagggttgagatatatttttactcttag |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44691254 |
catatagtagagatttccaagatttgtattggtatggaaaattgatctgtctcatgtagaggactattttgtgagggttgagatatatttttactcttag |
44691353 |
T |
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| Q |
386 |
ttttacaattggattgtttctgagaaaacacgattccatgaaggcttctagttct |
440 |
Q |
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| T |
44691354 |
ttttacaattggattgtttctgagaaaccacgattccatgaaggcttctagttct |
44691408 |
T |
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