View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21081_high_1 (Length: 784)

Name: NF21081_high_1
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21081_high_1
NF21081_high_1
[»] chr1 (2 HSPs)
chr1 (12-766)||(35127809-35128563)
chr1 (17-290)||(35128636-35128912)
[»] chr7 (1 HSPs)
chr7 (192-412)||(26778813-26779045)


Alignment Details
Target: chr1 (Bit Score: 727; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 12 - 766
Target Start/End: Complemental strand, 35128563 - 35127809
Alignment:
Q  12 atcatcaaatcgccaattggttcatctcgaaaacttcttccatcaatcagttcagaagtttcagtgaccggctgctgtgaatcatttgagccatcaactt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35128563 atcatcaaatcgccaattggttcatctcgaaaacttcttccatcaatcagttcagaagtttcagtgaccggctgctgtgaatcatttgagccatcaacct 35128464  T
Q  112 ctaactctaaattacctcttgcagattcacctaattctacctcattgcaaacattacccttatcatcatcatttcttgattgaactgtatccttgcatac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35128463 ctaactctaaattacctcttgcagattcacctaattctacctcattgcaaacattacccttatcatcatcatttcttgattgaactgtatcctcgcatac 35128364  T
Q  212 ttttgaatcttcttgactcctcatttctccttcagtccacaaatcatgtttgtcttcctgttctgcttccacattttcaacaactgaaccaatatcttga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35128363 ttttgaatcttcttgactcctcatttctccttcagtccacaaatcatgtttgtcttcctgttctgcttccacattttcaacaactgaaccaatatcttga 35128264  T
Q  312 tggctttcacttgttccactggaaactccttttgcatattctcctctcatatcatttctaccctcatctctaattttttctaatagcccttttgtttctt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35128263 tggctttcacttgttccactggaaactccttttgcatattctcctctcatatcatttctaccctcatctctaattttttctaatagcccttttgtttctt 35128164  T
Q  412 tatgcattgcttcctcctctatatcaccctcttcgacctcatcctcacattcctctaaaacaacatttgtgacaccaaactcgaagggttctttaaattc 511  Q
    |||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35128163 tatgcattgcttcctcctctatatcaccctcttccacctcatctccacattcctctaaaacaacatttgtgacaccaaactcgaagggttctttaaattc 35128064  T
Q  512 ttcactttcatcaaacccttccataattgtacctccactcatcggcttctcatcatcaagcttatgtggtgaaggttcctcctcagagaaataatcagtg 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35128063 ttcactttcatcaaacccttccataattgtacctccactcatcggcttctcatcatcaagcttatgtggtgaaggttcctcctcagagaaataatcagtg 35127964  T
Q  612 ctgtctttctcagaaccattgtactggatgacatcgttggcatcacttgaatgtgataattccggctcgaactcctcgttcacagccctttgcccataat 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35127963 ctgtctttctcagaaccattgtactggatgacatcgttggcatcacttgaatgtgataattccggctcgaactcctcgttcacagccctttgcccataat 35127864  T
Q  712 cattatccaatatgacactttcctcgctaacatcaaccatttcattgtctctctt 766  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  35127863 cattatccaatatcacactttcctcactaacatcaaccatttcattgtctctctt 35127809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 35128912 - 35128636
Alignment:
Q  17 caaatcgccaattggttcatctcgaaaacttcttccatcaatcagttcagaagtttcagtgaccggctgctgtgaatcatttgagccatcaacttctaac 116  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||||    
T  35128912 caaatcaccaattggttcatcttgaaaacctcttccatcaatcagttcagaagtttcagagaccggcttctgtgaatcatttgaaccatcaacctctaac 35128813  T
Q  117 tctaaattacctcttgcagattcacctaattctacctcattgcaaacattaccc---ttatcatcatcatttcttgattgaactgtatccttgcatactt 213  Q
    |||||||||||||||| || ||| ||| |||||||||||||| | ||| | |||   |||||||||||||||||||||||| |||| |||| ||||||||    
T  35128812 tctaaattacctcttgaaggttcgcctgattctacctcattgaatacacttcccttattatcatcatcatttcttgattgagctgtctcctcgcatactt 35128713  T
Q  214 ttgaatcttcttgactcctcatttctccttcagtccacaaatcatgtttgtcttcctgttctgcttccacattttca 290  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35128712 ttgaatcttcttgatttctcatttctccttcagtccacaaatcatgtttgtcttcctgtcctgcttccacattttca 35128636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 192 - 412
Target Start/End: Original strand, 26778813 - 26779045
Alignment:
Q  192 tgaactgtatccttgcatacttttgaatcttcttgactcctcatttctccttcagtccacaaatcatgtttgtcttcctgttctgcttccacattttcaa 291  Q
    ||||| || |||| ||||||| ||||||||  |||| ||||||||||||| ||| ||| |||| |  ||||||||||| || || ||| || ||||||||    
T  26778813 tgaaccgtctcctagcatactcttgaatctgtttgattcctcatttctccatcaatccccaaacccagtttgtcttccagtgctacttgcatattttcaa 26778912  T
Q  292 caactgaaccaatatcttgatggct-ttcact-----tgttccactggaaactccttttgcatattctcctctcatatcatttctaccctcatctctaat 385  Q
    |||||| ||||||||| ||||   |  |||||     ||||||||| | ||  |||||||||| |||||||||||||||| | |||||||||||||| ||    
T  26778913 caactggaccaatatcatgattcatgatcactctcactgttccactaggaatcccttttgcatcttctcctctcatatcagtcctaccctcatctctgat 26779012  T
Q  386 tt------tttctaatagcccttttgtttcttt 412  Q
    ||      |||||||||||||||||||||||||    
T  26779013 tttttttctttctaatagcccttttgtttcttt 26779045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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