View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21081_high_10 (Length: 396)
Name: NF21081_high_10
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21081_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 378
Target Start/End: Complemental strand, 22362692 - 22362326
Alignment:
| Q |
12 |
atgaatgtcgtccatgcatcctgttacaaaatagaaaacgtgaacttaaggacccatttacttctaatattattttttgcttttcaaaatgcattttata |
111 |
Q |
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| T |
22362692 |
atgaatgtcgtccatgcatcctgttacaaaatagaaaacgtgaacttaaggacccatttacttctaatattattttttgcttttcaaaatgcattttata |
22362593 |
T |
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| Q |
112 |
aaacaatgagtattatttaaaattctgaataaatttcaaaatattattttcatattatctttggttattactaatactatcacaattcaaaataaaaatt |
211 |
Q |
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|| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362592 |
aaccaatgagtgttatttaaaattcttaataaatttcaaaatattattttcatattatctttggttattactaatactatcacaattcaaaataaaaatt |
22362493 |
T |
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| Q |
212 |
cataataaattgtcatcccagcaaaccatagagaaaatagaatttaaaaatgaaaattgaaaaggttgttagaaattaatcatgccctaattttcacttt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362492 |
cataataaattgtcatcccagcaaaccatagagaaaatagaatttaaaaatgaaaattgaaaaggttgttagaaattaatcatgccctaattttcacttt |
22362393 |
T |
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| Q |
312 |
aatccttactcttatcaatatctatctattacaaatctataaatgtcgaagtgcacgccatacagct |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362392 |
aatccttactcttatcaatatctatctattacaaatctataaatgtcgaagtgcacgccatacagct |
22362326 |
T |
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