View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21081_high_3 (Length: 678)
Name: NF21081_high_3
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21081_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 54 - 342
Target Start/End: Original strand, 9499308 - 9499596
Alignment:
| Q |
54 |
attatggaaagaattactacacaaaatagcccaatgctatatttatacattgcatgattttaagttggatgatgttttcttataattcagccgcatgctc |
153 |
Q |
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| T |
9499308 |
attatggaaagaattactacacaaaatagcccaatgctatatttatacattgcatgattttaagttggatgatgttttcttataattcagccgcatgctc |
9499407 |
T |
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| Q |
154 |
ccctactttttagtaaacatatcctgagaaattggattagaccatcacaaaaccattgttttatggtgattttatccccataagaaattgggttaaaagc |
253 |
Q |
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| T |
9499408 |
ccctactttttagtaaacatatctttagaaattggattagaccatcacaaaaccattgttttatggtgattttatccccataagaaattgggttaaaagc |
9499507 |
T |
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| Q |
254 |
agcaaaatccggtgttggaactgttcagacccaacagactgcaaataattctaagtgaaacagctgtgtttagatttaccgtatttggt |
342 |
Q |
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| T |
9499508 |
agcaaaatccagcgttggaactgttcagacccaacagactgcaaataattctaagtgaaacagctgtgtttagatttaccgtatttggt |
9499596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 376 - 678
Target Start/End: Original strand, 9499594 - 9499896
Alignment:
| Q |
376 |
ggtctctgccacggtagttggttgcaccgattttgggtagctaaatgtagccgctgcccaacacatccaaggagtgatgcgtgaccgttatttcatcagg |
475 |
Q |
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| T |
9499594 |
ggtctctgccacggtagttggttgcactgattttgggtagctaaatgtagccgctgtccaatgcatccaaggagtggtgcgtgaccgttatttcatcagg |
9499693 |
T |
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| Q |
476 |
catgtaaaatggggaattacttccccacttctgcatgacccacctatggtgtcctatcatttttgtggatcccccactcctttaagggtttgaaccaaag |
575 |
Q |
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| T |
9499694 |
catgtaaaatggggaattacttccccatttctgcatgacccacctatggtgtcctatcatttttgtggatcccccactcctctaagggtttgaaccaaag |
9499793 |
T |
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| Q |
576 |
cctctcccatcaccaacccccactttttatgaaggccttattccactccaccatttgttgcctactttcaatttctgtacatggtttgttattgtctgct |
675 |
Q |
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| T |
9499794 |
cctctcccatcaccaacccccactttttatgaaggccttattccactccaccatttgttgcctactttcaatttctgtacatggtctgttattgtctgct |
9499893 |
T |
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| Q |
676 |
aga |
678 |
Q |
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| T |
9499894 |
aga |
9499896 |
T |
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