View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21081_high_6 (Length: 533)
Name: NF21081_high_6
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21081_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Complemental strand, 36725415 - 36724906
Alignment:
| Q |
18 |
aataggaagaggtgtgaatatcccgttgtttggcatgtcatggctaaatgagggaatgnnnnnnnnacaactgatagtcttatttacgcgtctttagctc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |
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| T |
36725415 |
aataggaagaggtgtgaatatcccgttgtttggcatgtcatggctaaatgatgggatgtttttct-acaactgatagtcttatttacgcgtctttagctc |
36725317 |
T |
|
| Q |
118 |
atatgaaggtaaaggatattcttgatcaatcctccaaggtatggaattctcctttaatttataatcnnnnnnnatcaaaacacggtccagctgatcttga |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36725316 |
atgtgaaggtaaaggatattcttgatcaatcctccaaggtatggaattctcctttaatttataatctttttt-atcaaaacacggtccagctgatcttga |
36725218 |
T |
|
| Q |
218 |
atactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatggcaagtactcggtgcagagtgcctatagaatatgtgtta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| |
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| T |
36725217 |
atactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatggaaagtactcagtgcagtgtgcctatagaatatgtgtta |
36725118 |
T |
|
| Q |
318 |
atgaaattgctaataacacccatttgcatttaccagatcattggaatctagtttggaaactcaaagttccacctaaaataaaaaatcttgtttggcgt-- |
415 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36725117 |
atgaaattgctaataacacctatttgcatttactggatcattggaatctagtttggaaactcaaagttccacctaaaataaaaaatcttgtttggcgtgt |
36725018 |
T |
|
| Q |
416 |
gtgtcgttgttgttttcatacatgagcacgcctaagtagtaaat-ggttcattgtccaattgattgtgtaatatgtggaagtaattatgaggatgatatt |
514 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36725017 |
gtgtcgttgctgttttcatacatgagcacgcctaagtagtaaatgggttcattgtccaattgattgtgtaatatgtggaagtaattatgaggatggcatt |
36724918 |
T |
|
| Q |
515 |
catgttcttctc |
526 |
Q |
| |
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|||||||||||| |
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| T |
36724917 |
catgttcttctc |
36724906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 425 - 526
Target Start/End: Original strand, 716721 - 716823
Alignment:
| Q |
425 |
ttgttttcatacatgagcacgcctaagtagtaaat-ggttcattgtccaattgattgtgtaatatgtggaagtaattatgaggatgatattcatgttctt |
523 |
Q |
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|||||||| |||||||||| ||||| ||||| || ||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||||| |
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| T |
716721 |
ttgttttccaacatgagcacacctaattagtagataggttcattgtccaatagattgtgtaatgtgtgaaagtaattatgaggaaatcattcatgttctt |
716820 |
T |
|
| Q |
524 |
ctc |
526 |
Q |
| |
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||| |
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| T |
716821 |
ctc |
716823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 86 - 402
Target Start/End: Original strand, 8266464 - 8266782
Alignment:
| Q |
86 |
aactgatagtcttatttacgcgtctttagctcatatgaaggt-aaag--gatattcttgatcaatcctccaaggtatggaattctcctttaatttataat |
182 |
Q |
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||||||||| | ||||||||| ||||| |||||| ||||||| |||| ||||| ||| | |||||||||| |||||||||| ||| ||||||||| ||| |
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| T |
8266464 |
aactgatagccctatttacgcatctttcgctcatgtgaaggtgaaagatgatatccttaaacaatcctccagggtatggaatgctcatttaatttacaat |
8266563 |
T |
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| Q |
183 |
cnnnnnnnatcaaaacacggtccagctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatggcaa |
282 |
Q |
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| T |
8266564 |
ctttttttatcaaaatacttcccaactgattttgaatacacatttacaatctctggttaatgaagataagttgatttggaaggctg-aaaagaatggtaa |
8266662 |
T |
|
| Q |
283 |
gtactcggtgcagagtgcctatagaatatgtgttaatgaaattgctaataacacccatttgcatttaccagatcattggaatctagtttggaaactcaaa |
382 |
Q |
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|| |||||| |||||||||||||||||||| | ||||||||||||||| | ||||||||| ||||| || ||| ||| ||||||||||||||||| |
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| T |
8266663 |
ctattcggtgtgtagtgcctatagaatatgtgtaagtgaaattgctaataattctcatttgcatataccatgtcgttgaaatttagtttggaaactcaaa |
8266762 |
T |
|
| Q |
383 |
gttccacctaaaataaaaaa |
402 |
Q |
| |
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|| | |||||| |||||||| |
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| T |
8266763 |
gtcctacctaagataaaaaa |
8266782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 29713826 - 29713912
Alignment:
| Q |
191 |
atcaaaacacggtccagctgatcttgaatactcctttacaacctttggttgatgaggataagttgatttggaagactggaaaagaatg |
278 |
Q |
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|||| ||||||| ||||| || |||||||||||||||||| ||||||||| || |||||||||||||||||| || |||||||||| |
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| T |
29713826 |
atcataacacggctcagcttatattgaatactcctttacaaaatttggttgaggaagataagttgatttggaaggct-gaaaagaatg |
29713912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 520
Target Start/End: Original strand, 12226075 - 12226116
Alignment:
| Q |
479 |
tgtgtaatatgtggaagtaattatgaggatgatattcatgtt |
520 |
Q |
| |
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|||||||| ||||||| ||||||||||||||| ||||||||| |
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| T |
12226075 |
tgtgtaatttgtggaaataattatgaggatgacattcatgtt |
12226116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 414
Target Start/End: Complemental strand, 33907552 - 33907504
Alignment:
| Q |
366 |
tagtttggaaactcaaagttccacctaaaataaaaaatcttgtttggcg |
414 |
Q |
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|||| ||||| |||||||| |||||||||||||||||||| ||||||| |
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| T |
33907552 |
tagtgtggaagctcaaagtgccacctaaaataaaaaatctaatttggcg |
33907504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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